# Library Carpentry 2018-12-12/2018-12-13 @ ZB MED

- Short-link zum Pad: https://bit.ly/2rh0IwT

- [x] Introduction of the instructors and helpers
- [x] Sticky notes
- [x] Introduction of the participants
- [x] Ice breaker - Sort people by the following values:
- Sort by time time in research
- Group by research field
- Considering the course topic - how strong do you feel about knowing this already?
- [x] Code of Conduct https://software-carpentry.org/conduct/ => Be excellent to each other!
- [x] Photos and twitter
- [x] Wifi for external, options: eduroam and HOTSPOT.KOELN
- [x] Breaks
- [ ] Coffee/Tea
- [x] Bathroom
- [x] Material of the course
- https://librarycarpentry.github.io/lc-shell/
- https://librarycarpentry.github.io/lc-git/
- https://librarycarpentry.github.io/lc-python-intro/
- [ ] The pad for collaborative writing
- https://hackmd.io/3qDRHMLkQYyO_5wfdrCKPw
- Short URL: https://bit.ly/2rh0IwT
- Exercise - add your name to the list of participants
- [ ] Motivation
- Automation
- Reproducibility / Transparency
- [ ] Certificates

## Teilnehmende

- Ursula Arning (uarning)
- Silke Gotthardt (silkego)
- Michael Mang (michaelmang1)
- Konstanze Sigel (KonstanzeSigel)
- Marvin Lanczek
- Deborah Danowski (DeboDee)
- Lydia Matthießen (matthiessen)
- Hannelore Fries-Küpper (fries-kuepper)
- Gabriele Wollnik-Korn (GabrieleWo)
- Solveig Müller (Sunflower1979)
- Eva Hackenberg (hackenbergxyz)
- Beatrix Adam (SelmaCow)
- Konrad Förstner (konrad)

## Shell

Daten: https://raw.githubusercontent.com/librarycarpentry/lc-shell/gh-pages/data/shell-lesson.zip

Cheat Sheet: https://librarycarpentry.github.io/lc-shell/reference

## Python

https://www.python.org/dev/peps/pep-0008/

* html: https://github.com/OpenAPC/openapc-de/blob/master/data/fuberlin/APC_FU_Berlin_2015.csv
* Raw: https://raw.githubusercontent.com/OpenAPC/openapc-de/master/data/fuberlin/APC_FU_Berlin_2015.csv

**Exampes DOIs**:
- 10.1371/journal.pcbi.1004668

dois = ["10.1371/journal.pcbi.1004668", "10.21105/joss.01035", "10.1038/35057062", "10.21105/joss.01006"]

## Lessons

https://librarycarpentry.org/lc-shell/
https://librarycarpentry.org/lc-git/
https://librarycarpentry.org/lc-python-intro/

### How to run python

In Git Bash

$ winpty  /c/Users/SWCarpentry/Anaconda3/python.exe

## Useful links

https://automatetheboringstuff.com/

## What to do after the LC-workshop

- Install Git Bash and Anaconda or you machine (ask the IT-department)
- Find a good text editor (the next hacky-hour on the 20th at 14:00 will be based on that)
1) emacs
2) vim
3) spider
4) atom
5) pycharm community edition
- Go through the lessons and try to reproduce them alone
- Find small tasks you solve on a daily bases and try to solve them using the computation skills you have learned
- Participate to the hacky-hour regularly (if you can) and bring your own problems
- Ask around if you have problems (if we can we are always open to help)