Min RK
    • Create new note
    • Create a note from template
      • Sharing URL Link copied
      • /edit
      • View mode
        • Edit mode
        • View mode
        • Book mode
        • Slide mode
        Edit mode View mode Book mode Slide mode
      • Customize slides
      • Note Permission
      • Read
        • Only me
        • Signed-in users
        • Everyone
        Only me Signed-in users Everyone
      • Write
        • Only me
        • Signed-in users
        • Everyone
        Only me Signed-in users Everyone
      • Engagement control Commenting, Suggest edit, Emoji Reply
    • Invite by email
      Invitee
    • Publish Note

      Share your work with the world Congratulations! 🎉 Your note is out in the world Publish Note

      Your note will be visible on your profile and discoverable by anyone.
      Your note is now live.
      This note is visible on your profile and discoverable online.
      Everyone on the web can find and read all notes of this public team.
      See published notes
      Unpublish note
      Please check the box to agree to the Community Guidelines.
      View profile
    • Commenting
      Permission
      Disabled Forbidden Owners Signed-in users Everyone
    • Enable
    • Permission
      • Forbidden
      • Owners
      • Signed-in users
      • Everyone
    • Suggest edit
      Permission
      Disabled Forbidden Owners Signed-in users Everyone
    • Enable
    • Permission
      • Forbidden
      • Owners
      • Signed-in users
    • Emoji Reply
    • Enable
    • Versions and GitHub Sync
    • Note settings
    • Engagement control
    • Transfer ownership
    • Delete this note
    • Save as template
    • Insert from template
    • Import from
      • Dropbox
      • Google Drive
      • Gist
      • Clipboard
    • Export to
      • Dropbox
      • Google Drive
      • Gist
    • Download
      • Markdown
      • HTML
      • Raw HTML
Menu Note settings Versions and GitHub Sync Sharing URL Create Help
Create Create new note Create a note from template
Menu
Options
Engagement control Transfer ownership Delete this note
Import from
Dropbox Google Drive Gist Clipboard
Export to
Dropbox Google Drive Gist
Download
Markdown HTML Raw HTML
Back
Sharing URL Link copied
/edit
View mode
  • Edit mode
  • View mode
  • Book mode
  • Slide mode
Edit mode View mode Book mode Slide mode
Customize slides
Note Permission
Read
Only me
  • Only me
  • Signed-in users
  • Everyone
Only me Signed-in users Everyone
Write
Only me
  • Only me
  • Signed-in users
  • Everyone
Only me Signed-in users Everyone
Engagement control Commenting, Suggest edit, Emoji Reply
  • Invite by email
    Invitee
  • Publish Note

    Share your work with the world Congratulations! 🎉 Your note is out in the world Publish Note

    Your note will be visible on your profile and discoverable by anyone.
    Your note is now live.
    This note is visible on your profile and discoverable online.
    Everyone on the web can find and read all notes of this public team.
    See published notes
    Unpublish note
    Please check the box to agree to the Community Guidelines.
    View profile
    Engagement control
    Commenting
    Permission
    Disabled Forbidden Owners Signed-in users Everyone
    Enable
    Permission
    • Forbidden
    • Owners
    • Signed-in users
    • Everyone
    Suggest edit
    Permission
    Disabled Forbidden Owners Signed-in users Everyone
    Enable
    Permission
    • Forbidden
    • Owners
    • Signed-in users
    Emoji Reply
    Enable
    Import from Dropbox Google Drive Gist Clipboard
       owned this note    owned this note      
    Published Linked with GitHub
    Subscribed
    • Any changes
      Be notified of any changes
    • Mention me
      Be notified of mention me
    • Unsubscribe
    Subscribe
    # MPI Variants in conda-forge How are MPI variants best handled in conda-forge? There are a few broad cases: - package requires a specific MPI provider (easy!) - package works with any MPI provider (e.g. mpich, openmpi) - package works with/without MPI ## Building MPI variants: In `conda_build_config.yaml`: ```yaml mpi: - mpich - openmpi ``` In `meta.yaml`: ```yaml requirements: host: - {{ mpi }} ``` And rerender with: conda-smithy rerender -c auto to produce the build matrices. Current builds of both mpi providers have `run_exports` which is equivalent to adding: ```yaml requirements: run: - {{ pin_run_as_build(mpi, min_pin='x.x', max_pin='x.x') }} ``` If you want to do the pinning yourself (i.e. not trust the mpi providers, or pin differently, add): ``` # conda_build_config.yaml pin_run_as_build: mpich: x.x openmpi: x.x # meta.yaml requirements: host: - {{ mpi }} run: - {{ mpi }} ``` ## Including a no-mpi build Some packages (e.g. hdf5) may want a no-mpi build, in addition to the mpi builds. To do this, add `nompi` to the mpi matrix: ```yaml mpi: - nompi - mpich - openmpi ``` and apply the appropriate conditionals in your build: ```yaml requirements: host: - {{ mpi }} # [mpi != 'nompi'] run: - {{ mpi }} # [mpi != 'nompi'] ``` ### Preferring a provider (usually nompi) Up to here, mpi providers have no explicit preference. When choosing an MPI provider, the mutual-exclusivity of the `mpi` metapackage allows picking between mpi providers by installing an mpi provider, e.g. conda install mpich ptscotch or conda install openmpi ptscotch This doesn't extend to `nompi`, because there is no `nompi` variant of the mpi metapackage. And there probably shouldn't be, because some packages built with mpi doesn't preclude other packages in the env that *may* have an mpi variant from using the no-mpi variant of the library (e.g. for a long time, fenics used mpi with no-mpi hdf5 since there was no parallel hdf5 yet. This works fine, though some features may not be available). Typically, if there is a preference it will be packages with a nompi variant, where the serial build is preferred, such that installers/requirers of the package only get the mpi build if explicitly requested. <del> To de-prioritize a build in the solver, it can be given a special `track_features` field: - All builds *other than* the priority build should have a `track_features` field - Build strings can be used to allow downstream packages to make explicit dependencies. - No package should actually *have* the tracked feature. </del> **update:** track_features deprioritization has too high priority in the solver, preventing a package from adopting a variant of a dependency after some builds have already been made. Instead, use a build number offset to apply the preference at a more appropriate level. Here is an example build section: ```yaml {% if mpi == 'nompi' %} # prioritize nompi variant via build number {% set build = build + 100 %} {% endif %} build: number: {{ build }} # add build string so packages can depend on # mpi or nompi variants explicitly: # `pkg * mpi_mpich_*` for mpich # `pkg * mpi_*` for any mpi # `pkg * nompi_*` for no mpi {% if mpi != "nompi" %} {% set mpi_prefix = "mpi_" + mpi %} {% else %} {% set mpi_prefix = "nompi" %} {% endif %} string: "{{ mpi_prefix }}_h{{ PKG_HASH }}_{{ build }}" ``` ***Note:** `{{ PKG_HASH }}` avoids build string collisions on *most* variants, but not on packages that are excluded from the default build string, e.g. Python itself. If the package is built for multiple Python versions, use:* ```yaml string: "{{ mpi_prefix }}_py{{ py }}h{{ PKG_HASH }}_{{ build }}" ``` *as seen in [mpi4py](https://github.com/conda-forge/h5py-feedstock/pull/49/commits/b08ee9307d16864e775f1a7f9dd10f25c83b5974).* This build section creates the following packages: - `pkg-x.y.z-mpi_mpich_h12345_0` - `pkg-x.y.z-mpi_openmpi_h23456_0` - `pkg-x.y.z-nompi_h34567_100` Which has the following consequences: - The `nompi` variant is preferred, and will be installed by default unless an mpi variant is explicitly requested. - mpi variants can be explicitly requested with `pkg=*=mpi_{{ mpi }}_*` - any mpi variant, ignoring provider, can be requested with `pkg=*=mpi_*` - nompi variant can be explicitly requested with `pkg=*=nompi_*` If building with this library creates a runtime dependency on the variant, the build string pinning can be added to `run_exports`. For example, if building against the nompi variant will work with any installed version, but building with a given mpi provider requires running with that mpi: ```yaml build: ... {% if mpi != 'nompi' %} run_exports: - {{ name }} * {{ mpi_prefix }}_* {% endif %} ``` Remove the `if mpi...` condition if all variants should create a strict runtime dependency based on the variant chosen at build time (i.e. if the nompi build cannot be run against the mpich build). ## Complete example Combining all of the above, here is a complete recipe, with: - nompi, mpich, openmpi variants - run-exports to apply mpi choice made at build time to runtime where nompi builds can be run with mpi, but not vice versa. - nompi variant is preferred by default - only build nompi on Windows This matches what is done [in hdf5](https://github.com/conda-forge/hdf5-feedstock/pull/90). ```yaml # conda_build_config.yaml mpi: - nompi - mpich # [not win] - openmpi # [not win] ``` ```yaml # meta.yaml {% set name = 'pkg' %} {% set build = 1000 %} # ensure mpi is defined (needed for conda-smithy recipe-lint) {% set mpi = mpi or 'nompi' %} {% if mpi == 'nompi' %} # prioritize nompi variant via build number {% set build = build + 100 %} {% endif %} build: number: {{ build }} # add build string so packages can depend on # mpi or nompi variants explicitly: # `pkg * mpi_mpich_*` for mpich # `pkg * mpi_*` for any mpi # `pkg * nompi_*` for no mpi {% if mpi != 'nompi' %} {% set mpi_prefix = "mpi_" + mpi %} {% else %} {% set mpi_prefix = "nompi" %} {% endif %} string: "{{ mpi_prefix }}_h{{ PKG_HASH }}_{{ build }}" {% if mpi != 'nompi' %} run_exports: - {{ name }} * {{ mpi_prefix }}_* {% endif %} requirements: host: - {{ mpi }} # [mpi != 'nompi'] run: - {{ mpi }} # [mpi != 'nompi'] ``` And then a package that depends on this one can explicitly pick the appropriate mpi builds: ```yaml # meta.yaml requirements: host: - {{ mpi }} # [mpi != 'nompi'] - pkg - pkg * mpi_{{ mpi }}_* # [mpi != 'nompi'] run: - {{ mpi }} # [mpi != 'nompi'] - pkg * mpi_{{ mpi }}_* # [mpi != 'nompi'] ``` mpi-metapackage exclusivity allows `mpi_*` to resolve the same as `mpi_{{ mpi }}_*` if `{{ mpi }}` is also a direct dependency, though it's probably nicer to be explicit. ## Just mpi example Without a preferred `nompi` variant, recipes that require mpi are much simpler. This is all that is needed: ```yaml # conda_build_config.yaml mpi: - mpich - openmpi ``` ```yaml # meta.yaml requirements: host: - {{ mpi }} run: - {{ mpi }} ```

    Import from clipboard

    Paste your markdown or webpage here...

    Advanced permission required

    Your current role can only read. Ask the system administrator to acquire write and comment permission.

    This team is disabled

    Sorry, this team is disabled. You can't edit this note.

    This note is locked

    Sorry, only owner can edit this note.

    Reach the limit

    Sorry, you've reached the max length this note can be.
    Please reduce the content or divide it to more notes, thank you!

    Import from Gist

    Import from Snippet

    or

    Export to Snippet

    Are you sure?

    Do you really want to delete this note?
    All users will lose their connection.

    Create a note from template

    Create a note from template

    Oops...
    This template has been removed or transferred.
    Upgrade
    All
    • All
    • Team
    No template.

    Create a template

    Upgrade

    Delete template

    Do you really want to delete this template?
    Turn this template into a regular note and keep its content, versions, and comments.

    This page need refresh

    You have an incompatible client version.
    Refresh to update.
    New version available!
    See releases notes here
    Refresh to enjoy new features.
    Your user state has changed.
    Refresh to load new user state.

    Sign in

    Forgot password

    or

    By clicking below, you agree to our terms of service.

    Sign in via Facebook Sign in via Twitter Sign in via GitHub Sign in via Dropbox Sign in with Wallet
    Wallet ( )
    Connect another wallet

    New to HackMD? Sign up

    Help

    • English
    • 中文
    • Français
    • Deutsch
    • 日本語
    • Español
    • Català
    • Ελληνικά
    • Português
    • italiano
    • Türkçe
    • Русский
    • Nederlands
    • hrvatski jezik
    • język polski
    • Українська
    • हिन्दी
    • svenska
    • Esperanto
    • dansk

    Documents

    Help & Tutorial

    How to use Book mode

    Slide Example

    API Docs

    Edit in VSCode

    Install browser extension

    Contacts

    Feedback

    Discord

    Send us email

    Resources

    Releases

    Pricing

    Blog

    Policy

    Terms

    Privacy

    Cheatsheet

    Syntax Example Reference
    # Header Header 基本排版
    - Unordered List
    • Unordered List
    1. Ordered List
    1. Ordered List
    - [ ] Todo List
    • Todo List
    > Blockquote
    Blockquote
    **Bold font** Bold font
    *Italics font* Italics font
    ~~Strikethrough~~ Strikethrough
    19^th^ 19th
    H~2~O H2O
    ++Inserted text++ Inserted text
    ==Marked text== Marked text
    [link text](https:// "title") Link
    ![image alt](https:// "title") Image
    `Code` Code 在筆記中貼入程式碼
    ```javascript
    var i = 0;
    ```
    var i = 0;
    :smile: :smile: Emoji list
    {%youtube youtube_id %} Externals
    $L^aT_eX$ LaTeX
    :::info
    This is a alert area.
    :::

    This is a alert area.

    Versions and GitHub Sync
    Get Full History Access

    • Edit version name
    • Delete

    revision author avatar     named on  

    More Less

    Note content is identical to the latest version.
    Compare
      Choose a version
      No search result
      Version not found
    Sign in to link this note to GitHub
    Learn more
    This note is not linked with GitHub
     

    Feedback

    Submission failed, please try again

    Thanks for your support.

    On a scale of 0-10, how likely is it that you would recommend HackMD to your friends, family or business associates?

    Please give us some advice and help us improve HackMD.

     

    Thanks for your feedback

    Remove version name

    Do you want to remove this version name and description?

    Transfer ownership

    Transfer to
      Warning: is a public team. If you transfer note to this team, everyone on the web can find and read this note.

        Link with GitHub

        Please authorize HackMD on GitHub
        • Please sign in to GitHub and install the HackMD app on your GitHub repo.
        • HackMD links with GitHub through a GitHub App. You can choose which repo to install our App.
        Learn more  Sign in to GitHub

        Push the note to GitHub Push to GitHub Pull a file from GitHub

          Authorize again
         

        Choose which file to push to

        Select repo
        Refresh Authorize more repos
        Select branch
        Select file
        Select branch
        Choose version(s) to push
        • Save a new version and push
        • Choose from existing versions
        Include title and tags
        Available push count

        Pull from GitHub

         
        File from GitHub
        File from HackMD

        GitHub Link Settings

        File linked

        Linked by
        File path
        Last synced branch
        Available push count

        Danger Zone

        Unlink
        You will no longer receive notification when GitHub file changes after unlink.

        Syncing

        Push failed

        Push successfully