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Software Carpentry 2019-12-02/2019-12-03 @ ZB MED
Day 1
Participants:
Janko Sattler (X)
Alexander Kaczmarek (X)
Yanhong Hou (X) (yh_hou@163.com)
Andreas Scheel
Martin Höhne
Julia Désirée Mauz (X juliadesiree.mauz@gmail.com)
Ksenia Kolesnikova
Erika Muratov (X) (erika.muratov@dlr.de)
Xia LI (X)
Raphael Gries (X)
Daniele Civello (x)
Anna Cherianidou
Alba Filella Lopez de Lamadrid
Day 2
Git
Data
ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/Escherichia_coli/reference/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.gff.gz
Lessons
Our Lessons:
Python reading recommendations
What to do after the LC-workshop
Workaround if Anaconda doesn't work
Go to https://mybinder.org/ . Put the URL https://github.com/foerstner-lab/Bits_and_pieces_for_the_carpentries_workshops after "GitHub repository name or URL" and "write empty_jupyter_notebook_for_binder.ipynb" after "Path to a notebook file"
Click on "launch" .
Links
Python 3 Quick Tip: The easy way to deal with file paths on Windows, Mac and Linux
Merging and Joining of Pandas Dataframes
Heatmap
https://python-graph-gallery.com/100-calling-a-color-with-seaborn/