Justus Magin
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    # xdggs development meetings Meeting link: https://numfocus-org.zoom.us/j/81977735338?pwd=pVM3UvnSAJORc2p4Oad39TESPvBzV5.1 ## Nov 3, 2025 ### Attendees - Wai Tik Chan / @tik65536 - Justus Magin / @keewis ### 60-second updates - Tik: - working on the OGC DGGS API - possibly a library that uses xdggs and queries the API? - Justus: - ### Agenda ## Oct 20, 2025 (Justus is on holiday) ## Oct 06, 2025 (cancelled, for lack of attendees) ## Sep 22, 2025 (Justus is travelling) ## Sep 8, 2025 ### Attendees - Justus Magin / @keewis - Wai Tik Chan / @tik65536 ### 60-second updates - Justus: - alignment: https://github.com/xarray-contrib/xdggs/pull/166 - sel for MOCIndex - querying by geometries (tentative API): https://github.com/xarray-contrib/xdggs/pull/169 - NASA / a adjacent group is interested in a cubed-sphere xdggs backend - Tik: MOC for the ISEA grid, trying to use (https://cds-astro.github.io/mocpy/index.html) ## Aug 11, 2025 ### Attendees - Justus Magin / @keewis - Alex Kmoch / @allixender ### 60-second updates - Alex - OGC DGGS-AI pilot, demonstrating OGC DGGS API as frontend to XDGGS/Zarr (and dataframe Parquet/database tables) backends, but ideally have NUNIQ or ZUNIQ for HEALPIX hierarchical zonal identifiers https://github.com/LandscapeGeoinformatics/pydggsapi/ - DGGRIDlib, towards shared lib (vs current cmdline use): https://github.com/LandscapeGeoinformatics/dggridlib - DGGAL Jerome, potential XDGGS plugin: https://pypi.org/project/dggal/ - Justus: - positional slicing with multiple slices in xarray: https://github.com/pydata/xarray/pull/10573 - looking into sel for MocIndex ### Agenda ## Jul 14, 2025 (Justus is on holiday) ## Jun 30, 2025 ### Attendees - Justus Magin / @keewis ### 60-second updates - Justus: - new release of healpix-geo on PyPI - conversion functions for ellipsoidal healpix - Subsetting the MOC index by a positional integer array - thinking about extending the indexing xarray machinery by a list of (disconnected) slices ## Jun 16, 2025 ### Attendees - Justus Magin / @keewis - Alexander Kmoch / @allixender - Wai Tik Chan / @tik65536 - Pablo / @pablo-richard ### 60-second updates - Justus: - RangeMOC-based index is very close (https://github.com/xarray-contrib/xdggs/pull/151) - Tina made this: https://github.com/pangeo-data/awesome-HEALPix - Alex: - published hierarchical indexing for ISEA7H -> IGEO7 = ISEA7H+Z7 (https://agile-giss.copernicus.org/articles/6/32/2025/) - depth-first indexing scheme - still use dggrid for complicated things like vertices and neighbourhood - Awesome DGGS Github repo: https://github.com/LandscapeGeoinformatics/awesome-discrete-global-grid-systems ### Agenda - EOPF / position accuracy of healpix (ellipsoidal) - transformation: spherical = authalic, conversion to geographic - offset compared to geographic (between ±0.13° for WGS84) - investigate whether that's actual equal area, look at shape / distance distortion (with graphs that show the differences between spherical / ellipsoidal) - comes with a computational cost (e.g. spherical harmonics) - position accuracy: roundtrip? - tasks: - describe extension healpix to ellipsoid - evaluate the difference with spherical healpix - show at which refinement level the cell centers would flip to different IDs - healpix-geo issue to continue this discussion ## Jun 02, 2025 ### Attendees - Justus Magin / @keewis ### 60-second updates - Justus: - preparing a plot for the different definitions of latitude (no PR yet) - looking into a more sophisticated xarray index that is based on cell id ranges ([EOPF-DGGS#31](https://github.com/EOPF-DGGS/healpix-geo/pull/31)) ### Agenda ## May 19, 2025 ### Attendees - Justus Magin / @keewis - Alexander Kmoch / @allixender - Wai Tik Chan / @tik65536 ### 60-second updates - Justus - km-scale global hackathon - higher resolution data than expected - smarter way to index using sets of ranges (e.g. healpix MOCs) - image pyramids for visualization - need a overview table for cell sizes on healpix - interesting DGGS: a5, IVEA* ### Agenda ## May 04, 2025 (skipped) ## Apr 21, 2025 (skipped, easter holiday) ## Apr 7, 2025 ### Attendees - Justus Magin / @keewis - Alex Kmoch / @allixender - Wai Tik Chan / @tik65536 ### 60-second updates - Alex - trying to visualize ~1M cells - api service: does the index have to live in memory? - Justus - regridding post: https://discourse.pangeo.io/t/distributed-computation-of-regridding-weights/5031 - regridding API draft: https://github.com/keewis/grid-weights/issues/7 - RTree with geographic data: https://dx.doi.org/10.1007/978-3-642-40235-7_9 - different algorithms (besides nearest)? - cell in polygon search? - zonal stats with dask: https://github.com/IAOCEA/pangeo-iaocea/blob/ffe75b848791d182064eb784a010556b3ea72677/pangeo_iaocea/regridding.py ## Mar 24, 2025 ### Attendees - Justus Magin / @keewis - Wai Tik Chan / @tik65536 ### 60-second updates - Justus - debugging of the windows CI of `grid-indexing` / `grid-weights` - it works, but building wheels for windows doesn't - (remove the `Requires.private` line from `$CONDA_PREFIX/Library/lib/pkgconfig/proj.pc`) - Tik - IGEO7 xdggs plugin restructured, separated conversion into a separated function. ### Agenda - polygon selection: - would be possible to rasterize the polygon, then perform a set union of cell ids - but this is inefficient, especially on higher resolution levels and big polygons - thus, we may need to have specialized indexing functions in the backend libraries - neighbours search - https://github.com/iaocea/healpix-convolution ## Mar 10, 2025 ### Attendees - Justus Magin / @keewis - Alex Kmoch / @allixender - Wai Tik Chan / @tik65536 - Kayziel Martinez / @kai-zie ### 60-second updates - Justus: nothing new - Alex: - ESA proposal on Healpix/DGGS for satellite data submitted - xdggs-dggrid4py link in the ecosystem page ### Agenda - xdggs tutorial at LPS? (needs Alex / Tina to discuss) - Alex will try to submit (Deadline was today) - debugging zoom: https://cnrs.zoom.us/j/96858567435?pwd=qVtdQwpVzmCV4GaLqOGZLjDk6zrgMd.1 ## Feb 24, 2025 ### Attendees - Justus Magin / @keewis - Wai Tik Chan / @tik65536 - Kayziel Martinez / @kai-zie ### 60-second updates - Tik: release for the xdggs extension - https://github.com/LandscapeGeoinformatics/xdggs-dggrid4py - Kayziel: - trying out xdggs and the extension - Justus: - interaction with the cdshealpix rust package maintainer - kth ring neighbours search (or `neighbours_disk`) - wrapper/vendor package: https://github.com/keewis/healpix-geo/ - - progress on regridding of arbitrary grids using polygons: - gist: https://gist.github.com/keewis/1ba41873065e2a2f68a12269dbf1ae11 - distributed tree PR merged ## Feb 10, 2025 ### Attendees - Justus Magin / @keewis - Wai Tik Chan / @tik65536 - ### 60-second updates - Justus: - multi-dimensional `explore` using sliders - https://github.com/xarray-contrib/xdggs/pull/124 - release coming soon - ### Agenda - minimal dependencies - https://github.com/xarray-contrib/xdggs/issues/128 - extensions page - contains a guide on how to write plugins - with a list of known plugins ## Jan 27, 2025 ### Attendees - Justus Magin / @keewis - Alex - Tik - Tina ### 60-second updates - Justus: - more progress on regridding (public interface still to be done): - https://github.com/keewis/grid-indexing - https://github.com/keewis/grid-weights - several merged PRs: - allow passing colormap objects (by @annefou): https://github.com/xarray-contrib/xdggs/pull/120 - override the grid parameters: https://github.com/xarray-contrib/xdggs/pull/63 - fix the healpix repr: https://github.com/xarray-contrib/xdggs/pull/119 - should we cut a new release? - yes ### Agenda - plugins - create documentation on plugin writing ## Jan 13, 2025 (first meeting in 2025) ### Attendees - Justus Magin / @keewis - Alexander Kmoch / @allixender - Wai Tik Chan / @tik65536 - Kayziel Martinez ### 60-second updates - Justus: progress on regridding (indexing): https://github.com/keewis/grid-indexing - Alex/Tik: XDGGS plugin - https://github.com/LandscapeGeoinformatics/xdggs-dggrid4py ### Agenda - multi-dimensional arrays (https://github.com/xarray-contrib/xdggs/issues/117) - parents: https://github.com/xarray-contrib/xdggs/pull/62 - limit to just computing the parent cell ids - don't worry about compressed cells - overriding grid metadata in `decode`: https://github.com/xarray-contrib/xdggs/pull/63 - use the accessor method - try to avoid the internal consistency check somehow ## Dec 30, 2024 (cancelled, end of year holidays) ## Dec 16, 2024 (cancelled, Alex and Justus are travelling) ## Dec 02, 2024 ### Attendees - Justus Magin / @keewis - Alexander Kmoch / @allixender - Wai Tik Chan / @tik65536 - Tina odaka / @tinaok - Alejandro Coca-Castro / @acocac ### 60-second updates - Justus - preparing for presentation on Wednesday - discussion on selecting cells using geometries - conda-forge packages for h3ronpy - Alex - preparing to migrate the dggrid - interest in `xdggs` from Canada - Tina - will submit the abstracts today - Alejandro - a colleague is using H3 for land use / weather modelling, interested in xdggs ### Agenda ## Nov 18, 2024 ### Attendees - Justus Magin / @keewis - Alexander Kmoch / @allixender - Wai Tik Chan / @tik65536 ### 60-second updates - Justus: - very short presentation of xdggs during the CNES-pangeo meeting last week - switched the healpix code to use cdshealpix because of licensing issues - more work on preparing for the release (publications are still missing) ### Agenda - future of the healpix index / grid info class: - should we keep using healpy? (as in, do we live with the uncertainty whether GPLv2+ is legally allowed to force our code to be GPLv2+?) - healpy is tricky to install (mostly, no support for windows), and can cause segfaults in the upstream-dev CI - switch to cdshealpix / cdshealpix-python as proposed in https://github.com/xarray-contrib/xdggs/pull/92? - decision: merge once all CI issues have been resolved - do we create a separate package for healpy (something like xdggs/xdggs-healpix-healpy)? How do we choose which implementation is used? - extend `xdggs.decode` (or `ds.dggs.decode`, should we merge https://github.com/xarray-contrib/xdggs/pull/63) - other implementations: - https://github.com/manaakiwhenua/rhealpixdggs-py - showcase presentation description - Justus will send a draft of the showcase description - documentation pages on different DGGS - into the user guide - Alex will send in a PR ## Nov 4, 2024 ### Attendees - Justus Magin / @keewis - Alejandro Coca-Castro / - Alexander Kmoch / @allixender - Tina odaka / @tinaok ### 60-second updates - Justus - preparing for release (publications page still missing) - Alejandro - Going through xdggs docs ### Agenda - expose the dggs registering function publicly and write a guide for it - https://pypi.org/project/icosphere/ - Justus will open an issue and ping Alejandro - relation to [uxarray](https://github.com/UXARRAY/uxarray) and [xugrid](https://github.com/Deltares/xugrid)? - target audience? conventions? standards? - in-memory vs cell ids - Justus will open an issue on uxarray - Show case XDGGS 4th Dec. - CNES meeting on Nov 11, 2024 - https://docs.google.com/document/d/1goKPEfsv784jnfEz-5zup9i_ociPz7Ck4fUrdfeIw3s/edit?tab=t.0 - Docs - Alejandro will revisit the docs and open PRs for potential bugs in tutorials and/or doc improvements - Orgs (describe them in the docs? e.g. community section?) - Core repo, https://github.com/xarray-contrib/xdggs - Contributors, https://github.com/xdggs - Community, https://github.com/xdggs-community ## Oct 21, 2024 ### Attendees - Justus Magin / @keewis - Alexander Kmoch / @allixender - Tina Odaka / @tinaok - Wai Tik Chan / @tik65536 ### 60-second updates - Tina: - DestinE user meeting - funding opportunities - Alex: - dggrid transformation to a library: progress, but not there yet - Justus: - merged the visualization PR - investigation of polygon rasterization / polyfill / polygon search - [geometry_to_cells](https://h3ronpy.readthedocs.io/en/latest/api/arrow.html#h3ronpy.arrow.vector.geometry_to_cells) - [query_polygon](https://healpy.readthedocs.io/en/latest/generated/healpy.query_polygon.html#healpy.query_polygon) ### Agenda - release (https://github.com/xarray-contrib/xdggs/issues/75) - resolution → level: https://github.com/xarray-contrib/xdggs/pull/65 - xdggs-dggrid? ## Oct 7, 2024 ### Attendees - Justus Magin / @keewis - Tina Odaka / @tinaok - Alexander Kmoch / @allixender - Wai Tik Chan / @tik65536 ### 60-second updates - Justus - interactive visualization with lonboard - for quick loading, requires constructing polygons as geoarrow, not shapely - very fluid zooming / panning - up to 50M polygons on my machine (after that I run out of memory) - other visualizations (from Alex): - https://dggs-info.web.app/ ### Agenda - destine user meeting poster - https://docs.google.com/presentation/d/1CIky1FMr2PMwmiQXnWBY2ldJM0hD6NoicMVtsR892LI/edit?usp=sharing - https://docs.google.com/presentation/d/18OFBiMdkR0UsD81ix2vfaol-jN27kQGor-XDxCxO9c4/edit?usp=sharing - pangeo showcase talk (probably late Nov / early Dec) - method for computing parents / children of cell ids (name?) - use `derive_cells` for now, find a better term in the future ## Sep 23, 2024 (low attendance, cancelled) ## Sep 9, 2024 (Justus is absent, but the meeting may take place if sufficient interest) ## Sep 2, 2024 ### Attendees - Benoit Bovy / @benbovy - Alexander Kmoch / @allixender - Justus Magin / @keewis - Wai Tik Chan / @tik65536 ### 60-second updates - Justus: healpix-convolution ### Agenda - hierarchical operations: [#38](https://github.com/xarray-contrib/xdggs/issues/38) - `resolution` vs `level` (see [this comment](https://github.com/xarray-contrib/xdggs/pull/62#issuecomment-2295248616)) - parent / child cells ([PR #62](https://github.com/xarray-contrib/xdggs/pull/62)) - maybe lazy computation of cell ids - cell boundaries ([PR #30](https://github.com/xarray-contrib/xdggs/pull/30)) - try with spherely - ogc dggs wg: - abstract spec: https://docs.ogc.org/as/15-104r5/15-104r5.html#11 - ogc dggs api: https://docs.ogc.org/DRAFTS/21-038.html ## Aug 26, 2024 (low attendance, cancelled) ## Aug 12, 2024 (low attendance, cancelled) ## Jul 29, 2024 (low attendance, cancelled) ## Jul 15, 2024 (low attendance, cancelled) ## Jul 1, 2024 (low attendance, cancelled) ## Jun 17, 2024 (cancelled) ## Jun 3, 2024 ### Attendees - Justus Magin / @keewis - Benoit Bovy / @benbovy - Alexander Kmoch / @allixender - Clay ### 60 second updates - Justus - grid object PR is basically done - [healpix convolution](https://github.com/iaocea/healpix-convolution/): convolution on healpix using sparse matrices - Benoit - talk on xdggs at GeoPython - Demo with integrating xdggs with xvec - Alex - DGGRID improvements (z7 index similar to H3, incl resolution, parent-child, str and int64 repr) - Tik continued with DGGRID+xdggs -> Zarr, first experiences - a test Pybind11-based lib binding for DGGRID prototype, not ready for 'heavy-duty' yet, but good basis for discussion/architecture/design - Clay - ASCAD soil moisture ### Agenda - external index implementations (https://github.com/xarray-contrib/xdggs/issues/43) - some time later, as the API is bound to change - but definitely useful and on the roadmap - visualization - lonboard: pass H3 or S2 cell ids and data, the rendering is done on the GPU (using deck.gl) - passed through using GeoArrow ## May 20, 2024 (This is a holiday in ~~most of Europe~~ France and Germany, so attendance might be low) ### Attendees - Justus Magin / @keewis - Wai Tik Chan / @tik65536 ### 60 second updates - Tik: - trying to aggregate to a DGGS using `flox`'s `mode` aggregation - pretty slow to aggregate ~500MB of data - `flox`'s `mode` aggregation uses `scipy.stats.mode` with lots of small arrays - might be faster to use a custom implementation in `numba` - once you have that, maybe add it to `numbagg`? ## May 6, 2024 ### Attendees - Justus Magin / @keewis - Daniel Loos / @danlooo - Wai Tik Chan / @tik65536 - Alexander Kmoch / @allixender ### 60 second updates - Justus: - upstream-dev CI: can't build healpy in upstream-dev, thus disabled - grid info objects: basically done for healpix, h3 to be done, still needs a good test strategy - looking into nth-order neighbours with healpix - Alex: - ### Agenda - meeting room (host privileges) - Multi dimensional Index - e.g. DGGRID PROJTRI (face, x, y) or [H3 IJK](https://h3geo.org/docs/core-library/coordsystems/#ijk-coordinates) - some DGGS of aperture 4 allow to store the data in just 10 matrices without gaps ![image](https://hackmd.io/_uploads/Hyq1yLLzR.png) - 2D index suited for 2D convolutions on high res data at global scale [Convolutions at Uber](https://www.youtube.com/watch?v=z3PaGIQTFSE) - 2D lon/lat Bounding boxes can be descibed easier with a multidimensional index, no need to list ids of all cells individually - However, we currently use PandasIndex which must be 1D. - can be replaced with a suitable multi-dimensional index by the DGGS index implementation (DGGS indexes are nested indexes) - Index choice depends on use case - 1D Index: small datasets, few points, data frame, GIS - 2/3D Index: big datasets, all points, raster, convolutions ## April 22, 2024 ### Attendees - Justus Magin / @keewis - Alexander Kmoch / @allixender - Wai Tik Chan / @tik65536 - Tina Odaka / @tinaok ### 60-second updates - Justus: - presentation about xdggs at the EGU last week - `decode` function - Tik: - DGGRID initial prototype for DGGSIndex: - ![image](https://hackmd.io/_uploads/HkOXrAQ-A.png) - ![image](https://hackmd.io/_uploads/r1OIHR7b0.png) - tina: - grib2 extension for healpix should be able to recognised by xdggs - information from Kluft, Lukas(mpg) ``` Section 3 in a GRIB file describes the grid and its defining parameters. The important information for you is the following: gridDefinitionTemplateNumber = 150 [150 means HEALPix] Nside = 1024 [The nside parameter defining the resolution of the HEALPix grid] ordering = 1 [A flag denoting the ordering of the grid, 1 = nested] ``` ### Agenda - workflow: - separate resources for regridding (out-of-scope for xdggs) - demonstrate the use with xdggs - DGGS resolution: - small number, starting with 0 / 1 (depending on the specific dggs) - paper: deadline in two weeks ## April 8, 2024 ### Attendees - Justus Magin / @keewis - Anne Fouilloux / @annefou - Benoît Bovy / @benbovy - Alexander Kmoch / @allixender - Wai Tik Chan / - Tina Odaka / @tinaok ### 60-second updates - Justus: current status of xdggs - index implementations: - h3: h3ronpy - healpix: healpy (replace with cdshealpix?) - initialization, conversion to/from cell centers, selection using cell centers - PR: [grid objects](https://github.com/xarray-contrib/xdggs/pull/39) - Alex/Tik; - DGGRID (ISEA7H), now would start with dggrid4py test plugin - OGC towards DGG RS registry -> how to metadata define DGGS type and its properties (think proj string or WKT CRS) - hope to have Python bindings eventually - saw a guy do a DGGRID WASM, could we have a wasmtime? ### Agenda - high-level overview of usage workflow - data production, regridding (out of scope for the library): xesmf, binning, ... - examples of producing data in a separate repository - calculations: - transforms: cell centers, cell outlines / boundaries (coordinates, shapely/spherely polygons), ... - indexing: selection, neighbor search, ... - repeating values? - geometric operations: overlap, intersection, ... (using xvec?) - hierarchical operations: parent cells, siblings, up / downscaling (binning, interpolation), ... - storing to disk: conventions? - → OGC DGG RS? - custom decoder?

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