--- tags: turing-way, collaboration-cafe --- # _Turing Way_ online Collaboration Cafe | 18 March 2020 Thank you for joining the _Turing Way_'s online Collaboration Cafe! We're delighted to have you here :coffee: :sparkles: :cake: (*We do recommend bringing your actual tea, coffee, water etc. to this cafe! :smile:*) **What?** *The Turing Way is a **lightly opinionated guide to reproducible data science and research**. This collaboration cafe aims to engage with researchers interested in learning and sharing more about this topic in an **online book**: https://the-turing-way.netlify.com* **Who?** ***Everyone** interested in reproducible data science and research are welcome to join the full or any part of The Turing Way project, community, and/or this call.* **When?** 18 March 2020, 19:00 GMT (check [your local time](https://arewemeetingyet.com/London/2020-03-18/19:00/TuringWay-CollaborationCafe)) **How?** Connect using this Zoom link: https://turing-uk.zoom.us/my/kirstiezoom ***All questions, comments and recommendations are welcome!*** ### Useful links * Shared notes: https://hackmd.io/@KirstieJane/CollabCafe * The Turing Way GitHub repository: https://github.com/alan-turing-institute/the-turing-way * All about [online Collaboration Cafes](https://github.com/alan-turing-institute/the-turing-way/blob/master/project_management/online-collaboration-cafe.md) * Turing Way calendar: https://calendar.google.com/calendar?cid=dGhldHVyaW5nd2F5QGdtYWlsLmNvbQ * [Contribution guidelines](https://github.com/alan-turing-institute/the-turing-way/blob/master/CONTRIBUTING.md) * Chat on Gitter: https://gitter.im/alan-turing-institute/the-turing-way * Join the mailing list: https://tinyletter.com/TuringWay ### Code of conduct * [Take a moment to read this](https://github.com/alan-turing-institute/the-turing-way/blob/master/CODE_OF_CONDUCT.md) ### Sign up below *Name + something you're excited about this week + an emoji to represent it ([emoji cheatsheet](https://github.com/ikatyang/emoji-cheat-sheet/blob/master/README.md))* *(Remember that this is a public document. You can use a pseudonym if you'd prefer.)* * Malvika Sharan + We have turing way illustrations and logo to share soon + :books: :female-office-worker: * Sarah Gibson + That I actually have time to join the Cafe! + :clock10: * Nadia Soliman + starting Collaborative leadership chapter in the Turing Way + :earth_africa: *I am so sorry I can no longer join you all - hope to see you all soon* * Arielle Bennett-Lovell + Diving back into chapters started during the Book Dash :dancer: (I'll only be able to make 1-2 pomodoro sessions) *Update: sorry time has caught up with me have to send my apologies!* * Tony Yang + bit more time to self reflect and work on the turing way + :tada: * Martin O'Reilly + Looking forward to contributing to the new remote working section and being part of my first Turing Way wession for a long time + :desktop_computer::house: * Kirstie Whitaker + I'm excited to be back at work after the UCU Strikes, I'm loving catching up with everyone + :computer: * Barbara Vreede + suddenly everyone knows how to Zoom! * Philippe Rocca-Serra: Excited to meet the group, I am working on the IMI FAIRplus Cookbook Apologies: Esther Plomp (I really would like to join but this week has been particular stressful as I'm attempting to hand in my thesis - yaaaay- so I will probably join the next one, sorry!) ### Conversation Starters *Advertise and promote your event, or anything exciting you're working on.* ✨ * [name=Tony] I stole Kirstie's group's [onboarding](https://github.com/WhitakerLab/Onboarding) procedure for my group. Seems timely to keep the group engaged :P * [name=Malvika] * [Newsletter - we released it today!](https://tinyletter.com/TuringWay/letters/sharing-updates-from-the-community-launching-our-new-logo-and-sending-wishes-for-your-well-being-during-the-covid-19-pandemic) * I have been running a mentoring program [Open Life Science](https://openlifesci.org/) (w/ Yo and Berenice), it's been 9 weeks, and "NOW" that they are stuck at home, our mentees totally get why we teach them about open and collaborative approaches for working - a colleague of mine (Holger) called it - Moment of Zen for OLS! Sooo satisfying! ### Schedule | Time | Activity | | ---- | -------- | | Start | 👋 Welcome, code of conduct review | | 5 mins | Introductions and personal goal setting | | 15 mins | 🍅 1st pomodoro session | | 35 mins | ☕️ Break 5 mins | | 40 mins | 🍅 2nd pomodoro session | | 1hr 0 mins | ☕️ Break 5 mins | | 1hr 5 mins | 🍅 3rd pomodoro session | | 1hr 25 mins | ☕️ Break 5 mins | | 1hr 30 mins | Open discussion: celebrations, reflections and future directions | | 2hr 0 mins | 👋 Close | ### Timers * 20 minute timer (beach): http://amazingtimer.com/countdown_timer.php?h=0&m=20&s=0&b=26 * 5 minute timer (cat): http://amazingtimer.com/countdown_timer.php?h=0&m=5&s=0&b=30 * 5 minute timer (chameleon): http://amazingtimer.com/countdown_timer.php?h=0&m=5&s=0&b=40 ### Breakout rooms: Topic proposals *If you have an idea for a topic you'd like to discuss in a breakout room, please add it below and put your name next to it. If you like one of the topics that is already suggested, please add your name next to that one. Team work makes the dream work. For more information about breakout rooms see [the description on GitHub](https://github.com/alan-turing-institute/the-turing-way/blob/master/project_management/online-collaboration-cafe.md#breakout-rooms).* Topic for breakout / Names ## Remote working/Malvika * Main Issue: https://github.com/alan-turing-institute/the-turing-way/issues/960 * Branch to work on: https://github.com/alan-turing-institute/the-turing-way/tree/ms-collaboration-book * Direct links to the files: https://github.com/alan-turing-institute/the-turing-way/tree/ms-collaboration-book/book/content/remote_collaboration Issues relating to remote collaboration: * Remote collaboration: Managing resources [#938](https://github.com/alan-turing-institute/the-turing-way/issues/938) * Remote collaboration: Managing Time Effectively [#940](https://github.com/alan-turing-institute/the-turing-way/issues/940) * Remote collaboration: Accountability for teams and individuals [#941](https://github.com/alan-turing-institute/the-turing-way/issues/941) * Remote collaboration: Leadership and management [#942](https://github.com/alan-turing-institute/the-turing-way/issues/942) * Remote collaboration: Establishing protocols [#943](https://github.com/alan-turing-institute/the-turing-way/issues/943) * Remote collaboration: Pros and Cons [#944](https://github.com/alan-turing-institute/the-turing-way/issues/944) * Remote collaboration: Wellbeing [965](https://github.com/alan-turing-institute/the-turing-way/issues/965) * Malvika will work on remote conference checklist! ## File structure (location) ![](https://i.imgur.com/WHs6ZSc.png) LINK: https://github.com/alan-turing-institute/the-turing-way/blob/ms-collaboration-book/book/website/_data/toc.yml ``` - title: Remote Collaboration url: /remote_collaboration/remote_collaboration sections: - title: Establishing Protocols url: /remote_collaboration/protocols/protocols - title: Managing Resources url: /remote_collaboration/resources/resources - title: Tool Choices url: /remote_collaboration/tools/tools - title: Leadership and Management url: /remote_collaboration/management/management - title: Well-being of your people url: /remote_collaboration/wellbeing/wellbeing - title: Case Studies url: /remote_collaboration/casestudies/casestudies - title: Perceived Pros and Cons url: /remote_collaboration/prosandcons/prosandcons - title: Checklists url: /remote_collaboration/checklists/checklists ``` ### Notes and questions * ### Feedback at the end of the call * [name=Sarah] My blog PR - feedback welcome! https://github.com/alan-turing-institute/the-turing-way/pull/964 * [name=Malvika] Checklist: https://github.com/alan-turing-institute/the-turing-way/blob/ms-collaboration-book/book/content/remote_collaboration/checklist/checklist.md ---- #### Wondering where to start? Here are a few suggestions for a good first contributions: - Fix a typo in [the book](https://the-turing-way.netlify.com) and/or [repository](https://github.com/alan-turing-institute/the-turing-way). - Flag the unclear or duplicated information in the book by opening an [issue on the GitHub](https://github.com/alan-turing-institute/the-turing-way/issues). - Fix an [old issue](https://github.com/alan-turing-institute/the-turing-way/issues) or comment on the the [pull requests](https://github.com/alan-turing-institute/the-turing-way/pulls). - Write your personal experience of reproducible research in this [google form](https://goo.gl/forms/akFqZEIy2kxAjfZW2). - See more info on the GitHub: https://github.com/alan-turing-institute/the-turing-way/blob/master/project_management/online-collaboration-cafe.md ---- Notes from the last call: ## Archive: 4 March 2020 Partcipants: * Malvika Sharan + We have turing way illustrations and logo to share soon + :books: :female-office-worker: * Martina Vilas + Sunshine is slowly coming back to Germany :sun_with_face: * Esther Plomp + I'm getting Indian take away food tonighhht! :heart_eyes: * Laura Carter + my friend just moved back to the UK :airplane: - sorry everyone, IT systems not cooperating this afternoon! :cry: * Oh noo! Join us here: https://gitter.im/alan-turing-institute/the-turing-way, We are running virtual cafe there too. * [Barbara Vreede](https://github.com/bvreede) + working from home today with the sun on my face :sunglasses: (also now I want Indian take away, Esther!) * Victoria + Looking forward to aligning my ELIXIR work on research data management with Turing way :book: ### Conversation Starters *Advertise and promote your event, or anything exciting you're working on.* ✨ * Last [month's Newsletter](https://tinyletter.com/TuringWay/letters/translating-the-book-into-chinese-and-expanding-our-content-at-this-week-s-book-dash) is very very exciting! We have a special newsletter for this month but will release after UCU strike this week. * ### Schedule | Time | Activity | | ---- | -------- | | Start | 👋 Welcome, code of conduct review | | 5 mins | Introductions and personal goal setting | | 15 mins | 🍅 1st pomodoro session | | 35 mins | ☕️ Break 5 mins | | 40 mins | 🍅 2nd pomodoro session | | 1hr 0 mins | ☕️ Break 5 mins | | 1hr 5 mins | 🍅 3rd pomodoro session | | 1hr 25 mins | ☕️ Break 5 mins | | 1hr 30 mins | Open discussion: celebrations, reflections and future directions | | 2hr 0 mins | 👋 Close | ### Timers * 20 minute timer (beach): http://amazingtimer.com/countdown_timer.php?h=0&m=20&s=0&b=26 * 5 minute timer (cat): http://amazingtimer.com/countdown_timer.php?h=0&m=5&s=0&b=30 * 5 minute timer (chameleon): http://amazingtimer.com/countdown_timer.php?h=0&m=5&s=0&b=40 ### Breakout rooms: Topic proposals *If you have an idea for a topic you'd like to discuss in a breakout room, please add it below and put your name next to it. If you like one of the topics that is already suggested, please add your name next to that one. Team work makes the dream work. For more information about breakout rooms see [the description on GitHub](https://github.com/alan-turing-institute/the-turing-way/blob/master/project_management/online-collaboration-cafe.md#breakout-rooms).* Topic for breakout / Names * Martina: Adapting contribution guideline for the updated jupyter notebook * Esther: Electronic lab notebook, and flagging some of the overlaps between open research chapters * Victoria: Exploring the project today! Wants to align ELIXIR data management content with the Turing Way. * They would be interested in contributing to the data management chapter and also add some of the country specific cases (mostly European but hopefully can inspire others to add their cases from non-european countries) * Laura: getting used to Github today! * <3 yay! :heart: The repository is quite confusing and takes a few minutes (hour) to get used to the location of different chapters. Let me know if you need any assistance :D * Barbara: Getting back to the project after book dash so reorienting. * Had some conflict files after the last contribution which she fixed already! ### Notes and questions * There are some missing information from open research that should be crosslinked with research data management * Esther: links to the issues opened: https://github.com/alan-turing-institute/the-turing-way/issues/909, https://github.com/alan-turing-institute/the-turing-way/issues/895 * Victoria will contribute to the issue * Martina has sent some PR for formatting how contributors are displayed * Esther is getting reviews done as planned! ### Feedback at the end of the call * Both Esther and Martina need some comments on their issue/PR * We need to discuss and share more about this project ## Archive: 19 Feb 2020 Summary: * Malvika Sharan - Finishing book dash presentation * Kirstie Whitaker - Fixing all_contributors bot * Yara Sanchez - Worked on fixing broken issue link on the contribution guideline ## Archive: 5 Feb 2020 ### Sign up below *Name + something you're excited about this week + an emoji to represent it ([emoji cheatsheet](https://github.com/ikatyang/emoji-cheat-sheet/blob/master/README.md))* *(Remember that this is a public document. You can use a pseudonym if you'd prefer.)* * Malvika Sharan + diving into new projects and checking out the music scene of London + :thought_balloon: * Kirstie Whitaker + heading out to Kent with my dog on Saturday to go for a walk somewhere I haven't been before + :dog: * Natalie Thurlby + house!! + :house_with_garden: (P.S. I might be a little bit late, but no more than 10 mins) * * ### Conversation Starters *Advertise and promote your event, or anything exciting you're working on.* ✨ * [name=Malvika] * We have a twitter page: https://twitter.com/turingway (less than 3 days, over 300 followers!! Wildly happy.) * I was introduced to a project called programming historian: https://programminghistorian.org/, really looking forward to see how they do things, and what we can learn from them. * [name=Kirstie] * Gave a workshop in the British Antarctic Survey last Friday. Shout outs to Anita for organising it this year and other Turing Way members who helped organising it last year. Since everything was archived (From last year), they could re-plan this workshop this year. * ![](https://raw.githubusercontent.com/scott-hosking/my-first-binder/master/BoostReproducibilityBinder_BAS_2020-01-31.jpg) * * * * ### Schedule and Timer placeholder ### Breakout rooms: Topic proposals *If you have an idea for a topic you'd like to discuss in a breakout room, please add it below and put your name next to it. If you like one of the topics that is already suggested, please add your name next to that one. Team work makes the dream work. For more information about breakout rooms see [the description on GitHub](https://github.com/alan-turing-institute/the-turing-way/blob/master/project_management/online-collaboration-cafe.md#breakout-rooms).* Topic for breakout / Names * [name=Malvika] Checking out bots, annotation and working on some issues/PRs * Sarah told me about this bot: https://github.com/probot/probot for managing pull requests. * Would like to explore https://dokie.li/ for annotation in th book * * ### Feedbacks at the end of the call * Update the reporting guideline. * * ## Archive: 15 January 2020 ### Participants *Name + something you're looking forward to this year + an emoji to represent it ([emoji cheatsheet](https://github.com/ikatyang/emoji-cheat-sheet/blob/master/README.md))* *(Remember that this is a public document. You can use a pseudonym if you'd prefer.)* * Malvika Sharan + diving into new projects and checking out the music scene of London + :running: * Nadia Soliman + finishing a preclinical systematic reveiw of cannabis and pain and my leg not being broken so I can :running: again! * Nathan Begbie + helping to set up reproducible DS pipelines at work * Esther Plomp + Finishing my PhD :+1: * Morgan Hough + setting up west coast data collection site for CMI HBN neuropsych/EEG ### Conversation Starters *Advertise and promote your event, or anything exciting you're working on.* ✨ * [name=Kirstie] Book dash applications close on 16 January!! Come and work with us IRL to contribute to the Turing Way in London 21 Feb 2020. * https://forms.gle/6jFy8B3HMP9p1kPf9 * Also - please join the mailing list! https://tinyletter.com/TuringWay * ### Schedule and Timers placeholder ### Breakout rooms: Topic proposals *If you have an idea for a topic you'd like to discuss in a breakout room, please add it below and put your name next to it. If you like one of the topics that is already suggested, please add your name next to that one. Team work makes the dream work. For more information about breakout rooms see [the description on GitHub](https://github.com/alan-turing-institute/the-turing-way/blob/master/project_management/online-collaboration-cafe.md#breakout-rooms).* Topic for breakout / Names * [name=Nadia] How to work collaboratively - Collaborative Leadership! * [name=Esther] GitHub, broken links report! * [name=Nathan] Software dev background, look through some of the issue. * [name=Morgan] Interested in reviewing Research environment chapter * * ### Notes and questions * Esther has opened multiple issues to work on and here is a PR https://github.com/alan-turing-institute/the-turing-way/pull/797 * Nathan has worked on this: https://github.com/alan-turing-institute/the-turing-way/pull/498 * Has sent bunch of PR, should add @Yo for review and see where * Malvika followed up on a few PR, discussed the project with Morgan * Nadia came to say hi, and will work on the accessibility part offline * * * ### Feedbacks at the end of the call * Esther and Nathan are considering to apply to the book dash, and got some questions clarified on the call * Morgan joined during his lunch time and explored the project, proof read a full chapter on environment * Thinks that the chapter is complete and may come back to adding suggestions if something pops up * * *