Hackathon Chair: Andra Waagmeester
The SWAT4(HC)LS hackathon is a recurring hackathon. After an intense set of tutorial and 2 conference days, there is the time to relax and use the tranquility and informal space provided to play, experiment, create new collaborations, prepare a new project or simply work on your own work.
This document collect some idea's to use for inspiration. At the beginning of the hackathon there will be time allocated to pitch idea's after which the hacking starts. the final 30 minutes of the day will provide space to demonstrate of show of a developed app
New pitches are welcome, submit yours here
Driver
Alasdair Gray (A.J.G.Gray@hw.ac.uk)
Introduction
Bioschemas aims to make life sciences resources on the web more Findable.
Aim
Prerequisites
Markup: none, although an awareness of JSON-LD and schema.org is an advantage
Validation: ShEx and Javascript
Expected Results
Deployment of markup in web resources
Driver
Egon Willighagen 0000-0001-7542-0286@orcid.org
Introduction
Keywords, MeSH terms are simple solutions to link topics to publications. However, our collective knowledge is not captured in single articles, they build on the effort explained in other articles. Citation networks are intrinsic to the provenance of our
knowledge. Wikidata, WikiCite, and Scholia provide a FAIR and Open
solution. Wikidata allows linking topics with articles about them.
WikiCite provides the citation graph, and Scholia visualizes it all.
Aim
main subject annotation coverage for theDriver
Marco Brandizi (marco.brandizi@rothamsted.ac.uk)
Introduction
Schemas and Vocabularies are gaining momentum in the field of agriculture, plant research and food.
Aim
This hackathon activity aims at using simple and practical extensions of existing schemas/ontologies, like schema.org and bioschemas.org, to cover the typical entities used in the agriculture, plant biology and food field.
Prerequisites
Domain knowledge on agriculture, plant research and food.
Expected Results
Drivers
Matthew Lange, Eric Prud'hommeaux, Tom Baker, Egon Willighagen, Andra Waagmeester
Introduction
Shape Expressions provide a powerful way to describe linked data sets. In this hackathon we will focus on food, specifically lasagna.
Aim
To create an initial collection of Shape Expressions to describe food phenotypes, the processes that produce and transform their ingredients, and the machines/people that engage in these processes.
Prerequisite:
Knowledge on food and agriculture data sets (recommended but not required). Having prepared, eaten or smelled lasagna.
Expected results:
Cooking up seed corpus of Shape Expressions by modeling lasagna. Providing some of the food linked data landscape, and serving as a nucleation site for further schema curation.
Driver
Matthias Löbe (matthias.loebe@imise.uni-leipzig.de)
Time frame
Half day (12:30pm)
Introduction
Soon all university hospitals in Germany are required to provide access to their health data for research purposes. Making this happen brings major challenges for technical infrastructure, legal frameworks but certainly with respect to semantic interoperability.
Aim
The aim of the hackathon is to map exemplary data elements from clinical research and care data, into a common metamodel of ISO 21526 from TC 215.
Prerequisites
Expected results
To find and state weaknesses in the ISO 21526 draft and to develop best practices to translate mappings into a common metamodel.
Material
Google Drive Folder
Driver
Vincent Emonet & Alexander Malic (Maastricht University)
Introduction
Today an increasingly amount of data is available on the Web, but this data usually comes in a myriad of formats (XML, CSV, RDB…) with no inherent semantic representation. Inspired by the FAIR data principles (Findable, Accessible, Interoperable, Reusable), we propose Data2services, a framework built with scalability in mind to convert any type of data to a standard data model that follows the Semantic Web standards.
This data is then accessible as RDF through a SPARQL endpoint. We are also working on automatically generating web services based on the data model for simplified access.
Aim
Prerequistes
Expected outcome
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