Outreach Hour Archive

# Outreach Hour Archive ### 12/19/2022 Should we make a Mastodon group account? Twitter is a mess and many scientists are leaving. EEB dept is on ecoevo.social https://fosstodon.org/@UofAEEB@ecoevo.social. fediscience.org is probably a good fit for us. ### 12/12/2022 - Dates for Q1 1. February 1: basic regex (with a followup on regex/string manipulation in R) 2. Feb 22: Multivariate Statistics: Using the Right Tool for the Job 3. March 29: Combining datasets using 'dplyr' (inspired by [DC "putting it together"](https://www.michaelc-m.com/Rewrite-R-ecology-lesson/04-putting-it-together.html)), demo of [non-equi joins](https://www.tidyverse.org/blog/2022/11/dplyr-1-1-0-is-coming-soon/#non-equi-joins) from dplyr 1.1.0, pre-req of familiarity with R and dplyr, provide link to DC materials - Workshops blurbs - regex - New workshop page cards: - All workshop wednesday cards created - Still need to convert series and other workshops to event cards - New Workshops page notes: - "drop in hours" shouldn't be in upcoming workshops - ### 11/28/2022 - Kristina - [x] Send out workshop announcement email to group listserv - [x] Contact Meghan Balk about regex workshop - Eric - Migrate workshops to new workshops page (got through June, principles of tidy data) - [x] Discuss using Stackoverflow posts to share technical problems and solutions ### 11/14/2022 * Eric - [x] Email Reed Cartwright at ASU about ResBaz - [x] Link to google scholar page from website - [x] Check group Twitter * Kristina: continue working on blog post draft * David: prep for Vet Med faculty meeting presentation ### 11/07/2022 * Eric * Create google scholar profile and start populating with papers * David * compile email list * make sure everyone has access to myemma * Kristina * Tweet about published ARDN blog * Start fall workshop series blog post draft ### 10/31/2022 - Kristina - Fall workshop series - Publish ARDN post - all talks https://www.youtube.com/playlist?list=PL_8uALA03ZsV6Io6EMcDPTaXPAhpAEDFZ - all data on Ag data commons: https://data.nal.usda.gov/ARDN - David - more projects --> cards - (finished PEG) - Eric - Publications page #### Publications page options: 1. Link to group google scholar page from menu bar item - E.g.: https://scholar.google.com/citations?user=HWhxBY4AAAAJ&hl=en - Pros: track citation metrics, easy to find and add papers - Cons: another thing to update, visually uninteresting 2. Link to a Zotero library from menu bar item - E.g.: https://www.zotero.org/groups/4775341/plant_phenology/items - Pros: easy for us to add papers. People could subscribe to our library through Zotero (not sure why they'd want to though). - Cons: another thing to update, visually uninteresting 3. Use "Publications" content type - E.g.: https://datascience.cals.arizona.edu/publication/brapi-application-programming-interface-plant-breeding-applications (imagine these on a single page like the new incubator page) - Pros: potential to be visually interesting - Cons: Probably need Hannah to create a new "view" for the content type "Publication". "Publication" content type probably also needs editing. The website is annoying to edit. I think we need to decide if this needs to be just a list of publications or something more annotated (e.g. https://terraref.org/news/publications). If it just needs to be a list, then setting up a Google Scholar page for the group is probably best. ### 10/24/2022 Eric: - Edit incubator project titles and descriptions - Follow entomology people on Twitter David - [x] incubator page for cdiff - move projects to cards - [x] PEcAn - [x] TERRA REF ### 10/17/2022 Eric: - tweeted about youtube channel - tweeted about Oct Workshop Wednesday - follow vet med people on Twitter ### 10/10/2022 - David: Website, requests from Hannah - Eric: Follow people on Twitter (nutrition) ### 10/04/2022 - [x] Discussion topic: do "workshops" require hands on work? - workshops should have some active learning component - participants have expectation - do something, ask participants to do something similar, but slightly different - ask questions - formula - background - some on your own getting a little comfortable w/ basic thinking - more advanced stuff - Eric: - do a tweet about october workshop - also one from prev. workshop? ### 9/26/2022 - Report back on website work by Hannah Fournier from Jessica; [incubator project spreadsheet](https://docs.google.com/spreadsheets/d/1bFvmF1vgbqzZm-gFif6pyvFWzhbYsiPQ1UGZLRxLuV8/edit#gid=0) info being pushed to website page - Choosing format for incubator summaries - Chris: Send out next Drone Discussion Group email - Eric: worked on re-writing incubator description - Eric: I put a "help" sign on a table in gather.town. Not sure if that's an improvment Notes on what makes a good incubator summary: Eric's fav: > A recent wildfire that burned a rangeland restoration experiment offered the opportunity to test whether restoration techniques to reduce cheatgrass held up following an additional disturbance. We developed Bayesian models to analyze plant height, cover, and count data using appropriate likelihoods and accounted for the complex ANOVA design with random effects. - starts with problem (but no "our collaborators approached us with ..." or "we created a shiny app...") - ends with outcome - just enough info that someone who wanted to learn more would click through to a longer README - Maybe include just name of main UA collaborator ### 9/19/2022 - [x] (Eric) Add pull request template to CALS-workshop repo for workshop checklist - Eric: worked on incubator projects website spreadsheet a little ### 9/12/2022 Possibilities for office hours to improve attendance: - Second time/day that doesn't conflict with Coffe and code or library hours - Advertize on all the same outlets we advertise workshops - Re-brand as "drop-in hours" For publications page on website: - Google Scholar group like for PEcAn: https://scholar.google.com/citations?user=HWhxBY4AAAAJ&hl=en - Zotero library set to public, members only: https://www.zotero.org/groups/1738910/agroforestry__climate_change Eric: - tweet about drop-in hours - retweets and likes ### 8/29/2022 Eric: - Summary for biofeedback sankey incubator project for website - Redecorate office hours space Everyone: - Brainstorm how to summarize selected incubator projects to go on the incubator page: https://docs.google.com/document/d/1uYHYFTHIEYKzv8OGguPeibvfKsj0cqx3clcKeH8wKmc/edit#heading=h.2w9zebyrrvrz ### 8/15/2022 - NSF submission - Boulder networking - Email sent - Leah Wasser isn't at Earth Lab anymore, but still in Boulder? - NCAR person - Jaquelyn Shuman - Email sent - Synthesis institute [article](https://beta.nsf.gov/news/new-nsf-center-will-advance-broaden-and-catalyze-environmental-data-science) - Jennifer Balch - Ty Allan Tuff - Cibele Amaral - Chelsea Nagy - Earth Lab - Nathan Quarderer is head of education ### 8/15/2022 - All: Summarize incubators for website: https://docs.google.com/document/d/1uYHYFTHIEYKzv8OGguPeibvfKsj0cqx3clcKeH8wKmc/edit# ### 8/8/2022 - Jessica: Ad + application form for BRIDGES fall workshop - Eric: advertise data validation workshop, group twitter - David: work on incubator projects page ### 8/1/2022 - Eric: advertize workshop - David: updating website ### 7/25/2022 (dsl update 08-01-2022): created epic https://github.com/cct-datascience/organization/issues/1006 and a new issues to cover these and other proposed changes) Ideas for re-structuring website to emphasize our services to UA. Consistent with our audience being primarily UA researchers who would take our workshops and apply for incubator proposals. - Put incubators up front on website - Move "Research Support" tab to home page - Rely less on listing our expertise (e.g. "Data Analysis" card) and more on showing examples of past projects - New tab for workshops (instead of card on "Research Support" page) - New tab for incubators (new page) - New incubators page: - About - Cards for data anlysis, data managment, visualization, modeling - Link to proposal instructions - Links to completed incubators (e.g. a blogroll of posts tagged "incubator") - New tabs: Home, People, Incubators, Workshops, Projects, Blog, Contact ### 6/20/2022 - Kristina - Review David's ARDN blog post - Prep data organization workshop materials/do logistics - Eric - Tweet about upcoming workshops and mailing list - PR for adding workshop task list issue template (https://github.com/cct-datascience/organization/pull/963) - Work on [workshop instructions](https://osf.io/tzmhp/wiki/Workshops/) on OSF - David - updated website landing page - create an issue for updated projects page https://github.com/cct-datascience/organization/issues/962 - working on publications page https://github.com/cct-datascience/organization/issues/756 ### 6/11/2022 - David drafted ARDN workshop blogpost https://docs.google.com/document/d/16a0L8Ue1nYbJFDOOoKQWfcKY0Kr7o7sRxhLtBaWaR-w/edit#heading=h.cypt2eh7w1ng - Eric created his website page and fixed some mistakes on the website - Jessica --> ### 4/18/2022 - Work on elevator pitch for group for Jessica's class announcements ### 4/11/2022 - Jessica and Kristina: PR for workshop series ### 3/28/2022 - Discussion topics - Additional advertising locations: postdoc association, grad students - May 10 for upcoming postdoc orientation; Jessica will make an advertisement slide; contact Jenny Hoit - CALS grad student orientation in August, contact is Dr. Limesand - Incubator deadlines instead of rolling? - Deadlines would have to be fairly frequent - Deadlines and rolling together? Submit whenever, but reviewed at a certain time - Regular incubator information sessions - Early fall semester? September? - Elevator speech at quarterly review - Drone day PR: blog post, tweet? - Future blog post about workshop series ### 2/28/2022 - Discuss monthly workshops, including March's - will wait to follow up w/ Jessica - David followed up w/ Matt Rahr about email - Email to previous workshop attendees about email list signup BCC everyone on the [email spreadsheet](https://docs.google.com/spreadsheets/d/1SU8Wtx7Ku1IMv8DOAU-37E12-AZP0CjnRy1vPSkmNGQ/edit#gid=0) Subject: Sign up for the ALVSCE Data Science Team email list! Hello, You are receiving this email because you have previously signed up for or attended one of the ALVSCE Data Science Team workshops. To learn more about future workshops, other news from our group and around campus, please sign up for our email list using [this form](https://signup.e2ma.net/signup/1965047/1923145/) to receive an email every month or so. Feel free to reach out if you have any questions or want more info! Cheers, ALVSCE Data Science Team datascience.cals.arizona.edu ### 2/14/2022 - Send email template image to Bryan Berrellez - BRIDGES email and survey sent, curriculum drafted - Heidi invited 2/15, Carlos and Greg invited 2/22 to office hours - Data Science Institute trainers - Tasked with 1 workshop/week - How can we strategically plan to overlap and cross-promote? - Reorganize the CALS email draft? - David forwarded to Matt Rahr - Maybe sign up for listserv first, all the rest can come later - Drone Day - Chris has reserved a room in the library - Looking into reserving bear down field - Starting to advertise - PR activities? (tweets, blog posts, etc.) ### 2/7/2022 - Review and send BRIDGES email to program manager - Finish last steps to set up workshop announcements email list - "Open Drone Data" = "ALVSCE Data Science Team" - Discuss BRIDGES curriculum (if time) - Email Tim Ottusch - fashion/data science hire? - colleague names to contact - Start BRIDGES skills survey - Incubator program advertisements - Have list of finished projects - Tag blog posts about incubator projects ### 1/12/2022 - Quarterly review meeting prep: - "Annual retreat" at Santa Ritas - [Notes](https://hackmd.io/CmZtrUfmSGu4r3zfgTkq1g?both) ### Jan outreach hour - Review and clean up Zenhub board and issues - Outreach communication discussion: 1. Identify current blocks/challenges - Reaching all of possible audience - Advertising workshops to previous workshop attendees - Making it easy and straightforward for interested people to get in touch with us 2. Identify listserv purpose and scope - Workshop specific? Or more general for our group - Want to be able to directly contact past workshop atteendees and people interested in attending workshops - Use a non-university platform like myemma; get metrics on usage - How often to use? Use no more than once a month - Should be easy to unsubscribe to - Disable reply all 3. Discuss group email address (is this necessary?) - CCT has one, ask Matt Rahr 4. Set up listserv - Compile email addresses of past attendees [spreadsheet](https://docs.google.com/spreadsheets/d/1SU8Wtx7Ku1IMv8DOAU-37E12-AZP0CjnRy1vPSkmNGQ/edit#gid=0) 5. Send out initial email through listserv 6. Draft email for Parker to send to CALS department heads' - Our group website (research support tab specifically), listserv sign up, workshop topics survey - Workshop discussion topics - Reoccurring workshop topics vs new topics (strike a balance, for folks who miss out on one, that it will come up again) - Advertising, especially with listserv - Quarterly/semester digest - Jessica: advertise jobs to ecoinformatics listserv - Add ability on website for someone to request a workshop topic ### 12/15/2021 - Jessica & Kristina: finalize and send out workshop series emails - Chris: Writing SPARCd planned changes document for moving off IRODS - gaining concensus on what's changing ### 12/1/2021 - Kristina: review agave blog post, review Pecan proposal - David Prep time series workshop - created [issue](https://github.com/az-digitalag/organization/issues/710), and [workshop github issue template PR](https://github.com/az-digitalag/.github/pull/1) zoom meeting, drafted description - Chris: catching up on AgBase documentation ### 11/24/2021 - Working on non-writing tasks during writing hour while stuff is fresh in head(s) (due to holiday) ### 11/17/2021 - Chris: respond to emails, continuing updating AgBase processing documents - Jessica: Rangeland restoration ms draft - Kristina: spring workshop series materials - [Website page](https://datascience.cals.arizona.edu/spring-2022-workshop-series-reproducibility-and-data-science-skills) - David: - [Slides about Incubator](https://docs.google.com/presentation/d/1tS8A9AlLeIDt8KPB1H4VYKKQIK0Ie_Qo1pXJcyR2Bus/edit#slide=id.p) for Parker - [Job Description](https://docs.google.com/document/d/1aKAUEsKSpBgjon3Wi2GJPmsNbx9PudND/edit) Could someone please review my draft blog posts from last week? https://docs.google.com/document/d/16a0L8Ue1nYbJFDOOoKQWfcKY0Kr7o7sRxhLtBaWaR-w/edit#heading=h.n143dgc90p9f ### 11/10/2021 * David to write Agave and CVPPA blog posts * drafts are here: https://docs.google.com/document/d/16a0L8Ue1nYbJFDOOoKQWfcKY0Kr7o7sRxhLtBaWaR-w/edit#heading=h.i7ianj50jpxb; also sent email to Agave interest group at Desert research lab - Chris: Respond to Drone Day email; DPP UI Documentation for running the server - ### 11/3/2021 - Kristina: working on rangeland docs incubator report - Chris: Working on AgBase Loading documents (forexample: https://bitbucket.org/cals-cct/agbase-data-update/src/master/agbase_database_update/Loading_Agbase_database_procedures.md) - Julian: One-pager and talking points for potential PIs ### 10/20/2021 - [ ] Everyone: create or update your book an appointment links - Added info about this to [office hours OSF page](https://osf.io/h9vqt/wiki/Weekly%20Office%20Hours/) - Kristina - Update this page to have book an appointment links in the office hours box https://datascience.cals.arizona.edu/services-overview - Count social media posts (5 blogs, 12 tweets, 12 retweets) - Add/move blog post images to "Photo" section to show up on main blog page - [ ] Jessica - state organic ag blog post - [ ] David update incubator wiki https://github.com/az-digitalag/organization/issues/501 - [ ] Chris: Write WebODM schedule for iRODS integration, write AgBase issues, https://github.com/az-digitalag/organization/issues/580, ping people for other items ### 10/13/202 - Kristina: start initial draft of [rangeland docs report](https://docs.google.com/document/d/1A06FxLhKYTWdrYkjiReDsXPGDTeDn3DGuq7qFBRFJtE/edit) ### 9/29/2021 - Put out ESA workshop PR by next Wednesday 10/6 - Kristina: edit workshop topics survey, get and incorporate feedback; ESA workshop curriculum page - Jessica: ESA SEEDS blog post - David: Chris' posters - Chris: Get started on planet labs incubator proposal ### 9/22/2021 - Chris: Add feedback on [poster advertising](https://github.com/az-digitalag/organization/issues/610) our incubator and office hours ### 9/15/2021 - Kristina: - post [incubator blog post](https://datascience.cals.arizona.edu/news/2021/09/announcing-data-science-incubator-program) and [tweet it](https://twitter.com/DigitalAgGroup/status/1438190162148831235) - Continue [workshop topics survey](https://forms.gle/pSLSH5s1L5dUmx1NA) - Jessica: write up incubator summary - David: review website, projects for CCT, state organic ag readme if time - Julian: Write SQL workshop description and outcomes ### 9/08/2021 - David - review [incubator blog post](https://docs.google.com/document/d/16a0L8Ue1nYbJFDOOoKQWfcKY0Kr7o7sRxhLtBaWaR-w/edit#) - done - update "contact-us" page - Jessica: write poll for tomorrow's class, initiate README for rangeland-restore repository - Chris: Organizing for Drone Day project - Kristina: [CCT website group project summaries](https://docs.google.com/document/d/1arv-hmRwIhqaxWGUvHClcZ2TseDRFDchGnPUwoh-Uvg/edit) ### 8/18/2021 - Chris: working on [DPP UI Tutorial](https://github.com/Chris-Schnaufer/Atlana/tree/main/docs) - David: Blog post - Julian: RCN proposal docs + review - Jessica: documenting rangeland restoration cover models - Kristina: start OSF wiki page for incubator [issue](https://github.com/az-digitalag/organization/issues/501) - [New page](https://osf.io/tzmhp/wiki/Incubator%20Program/) which will require a lot of review and editing ### 8/11/2021 - Julian: - [x] PSINet RCN docs - Chris: looking at documentation options for DPP UI (user based) ### 8/3/2021 - David: - worked on drones.arizona.edu - tweeted about KMAP https://twitter.com/DigitalAgGroup/status/1422982693516623873?s=20 - and recent paper on calibrating the terraref hyperspectral sensor https://twitter.com/terra_ref/status/1422985931586523137?s=20 - Chris: working on finishing up getting DPP UI running on CEREUS - Julian: - [x] Update office hours on website - [x] Update website (various fixes) - [x] [Biosketch for PSINet RCN proposal](https://github.com/az-digitalag/organization/issues/575) ### 7/21/2021 - Chris: Skipping writing; working on finishing up git repo workflows for DPP UI ### 7/14/2021 - Chris: Update README.md file for [sorghum_biomass_prediction](https://github.com/az-digitalag/sorghum_biomass_prediction) for generating Canopy Cover (after creating merge script and updating GitHub) ### 6/30/2021 - Discussion about incubator proposals, maybe changing name to statement of work or scope of work? - David: review incubator blog post - Kristina: work on volatility calculations incubator proposal ### 6/23/2021 - David - Updating CV - Julian - Write README for TACC backup process - https://github.com/az-digitalag/organization/issues/487 - [HackMD of WIP](https://hackmd.io/@julianp-diag/rkMj51Zhd) - Jessica - revising/writing RCN cyberinfrastructure - Kristina - Finish incubator blog post - Need David to review this before posting - Draft corresponding tweet for incubator blog post - This also needs to be reviewed before tweeting ### 6/16/2021 - Jessica: Writing pre-workshop survey, slides for Intro to Bayes shortcourse - Chris: Work on reproducing DPP paper results - terraref data - Kristina: work on [incubator program blog post](https://docs.google.com/document/d/16a0L8Ue1nYbJFDOOoKQWfcKY0Kr7o7sRxhLtBaWaR-w/edit#heading=h.87c7kcdc9go5) that Jessica has drafted up - Julian: Finish and publish blog post ### 6/10/2021 - Chris: DPP Paper - Kristina: - Read [article](https://www.aplu.org/news-and-media/News/aplu-releases-two-reports-on-gaps-in-employability-skills-and-workforce-preparedness-among-college-graduates) Julian shared - Reviewing AEOLUS reviews and proposal - Tweet about our website being finished > After quite a bit of time and hard work, our group has updated our website! Check it out to learn more about the projects we're working on, who our members are, and our research support activities @CALS_UA, including the new incubator program! https://datascience.cals.arizona.edu/ - Julian: - [x] Exosphere blog post: Integrate Jessica's suggestions - [ ] Review Blake's cybertraining paper - David: - poke around website and update content - updated home page w/ mission and vision - need to address the fact that 'what we do' overlaps with 'services'... ### 6/3/2021 - David: Review blurb on DIAG, RFP changes - Jessica: Outreach emails to Yuma Campus, review Julian's blog post ### 5/27/2021 - Discussion about office hours - More consistent advertising, e.g., same time each week - Advertising in more places, e.g., Cyverse Slack general - Having specific (rotating) topics certain weeks Jessica: Document Emily's code Kristina: Apply, Incubator proposal Chris: Update OSF re: office hours: https://osf.io/h9vqt/wiki/Weekly%20Office%20Hours/ ### 5/20/2021 - David - [Finish up incubator RFP](https://hackmd.io/odakRpDBRCmLri1FIYEV5Q) - moved to [google docs](https://docs.google.com/document/d/1mCLUq1mrqEWkmke6-nD4yV0d3nYu0nWkukbbf1XibCE/edit#heading=h.n1ak1x7eaw1c) - sent to Parker for review - review Jennifer's ODDPIG presentation - Kristina: [~~CCT service catalog~~](https://docs.google.com/document/d/1LIxkktiP219_Xd24vXpgA1Qz7j7WcuRORtN26p2Qujw/edit?ts=6089f271&pli=1#) Actually updated website project page and edited incubator rfp - Chris: doing JavaScript documentation (adding [issue to document](https://github.com/AgPipeline/issues-and-projects/issues/484) JSDoc standard for this project) - Julian: - [ ] Finish [Exosphere blog post](https://hackmd.io/@julianp-diag/HyeRJVndu) ### 5/14/2021 - Kristina: finish appointment making stuff - How to do this: https://support.google.com/calendar/answer/190998?co=GENIE.Platform%3DDesktop&hl=en#zippy=%2Ccreate-an-appointment-block - Doing half hour blocks, calling them "[Name]: Office Hours" - David: Jacob's notebook - Jessica: May workshop planning - Chris: documenting JavaScript code using [JSDoc](https://jsdoc.app/index.html) - Ended up learning about this tool and [Google's documentation standard](https://google.github.io/styleguide/jsguide.html#introduction) - Julian: - [x] [Exosphere blog post - draft](https://hackmd.io/@julianp-diag/HyeRJVndu) ### 5/7/2021 - Kristina: review [incubator summary](https://hackmd.io/odakRpDBRCmLri1FIYEV5Q); enable appointment-making on website ### 4/30/2021 - Toby & Matt showed up for first 15 minutes - Chris, Julian, Kristina - worked though some ideas and asked CCT for assistance - Worked on calendar display and adding new entries - ### 4/23/2021 - Everyone: group website - Kristina workshops and services page - David respond to Hannah, define incubator rfa - Jessica: incubator description - ### 4/9/2021 - Everyone: group website - See: https://docs.google.com/document/d/1-5M83Xg_A7elAQmOYiiYKh2Nc0svpqruo_oyFxE3O2k/edit?pli=1 ### 4/2/2021 - Chris: YouTube videos and related ### 3/26/2021 - Kristina: SAS proposal - Jessica: Phase II report figures/captions - Chris: YCEDA Small grant ### 3/19/2021 - [ ] David PEcAn documentation and draft RFP - [ ] Kristina: CS&S proposal ### 3/12/2021 * David: ODDPIG Email * Julian: * [x] CALS DS Ambassadors email * [ ] PEcAn documentation * Kristina: CS&S event fund proposal #2 * Jessica: MSR #### CALS DS Ambassadors email Emails: arutherford@email.arizona.edu, iav@arizona.edu, mkbusby@arizona.edu, bresette@email.arizona.edu Dear Austin, Isabella, Kathryn, and William, Some of you already know about DIAG Office Hours (the official announcement was in the ALVSCE weekly bulletin yesterday), but we want to specifically let all four of you know about this: https://datascience.cals.arizona.edu/office-hours Please consider this a standing invitation to DIAG Office Hours ('co-located' with ResBaz Coffee&Code). Feel free to use it as an informal venue to hang out with us, and with each other. Send the information to any CALS researchers who have data science and engineering questions. We are very excited to work directly with researchers in CALS on data science challenges. You four are the front-line data science enablers in CALS. As such we want to collaborate with you, and help you make an impact in your own missions as well. We hope to have many interesting conversations with you over the coming months, and to hear your suggestions to improve this office hours effort, as well as other ways to further data intensive research in CALS. All the best, Dr David LeBauer, Director of Data Science at CALS ### 3/5/2021 - Kristina: adding ARDN & PEG projects to project page - Julian - Office Hours: - [x] Review Kristina's edits - [x] Ask David for final :thumbsup: - [x] Add an Office Hours page to the website - [x] Try to only show 3-6 upcoming dates - [x] Send announcement to Matt Rahr (David added it to weekly bulletin) - David : revise mission and vision on website and OSF - Previos discussions - [Jan 2021](https://hackmd.io/ra4ywODBRO6nYxuupQhiRA) - Mission: To Enable Data Intensive Science in CALS and Beyond. - Vision: Open Science Will Enable Collaboration and Speed Discovery. #### Email to Matt Rahr about Office Hours Hi Matt, Our group (DIAG) is adding regular office hours to our outreach efforts. Could you please send out an announcement to your CALS mailing list to help us spread the word? The details are here: https://datascience.cals.arizona.edu/office-hours All the best, David LeBauer ### 2/19/2021 - Julian: - [x] [Office hours: Write up an announcement](https://app.zenhub.com/workspaces/ua-ag-data-science-5a57a3198339f11ba1c85775/issues/az-digitalag/organization/395) - [x] On the [HackMD: Website Improvements](https://hackmd.io/JuhlE_QNQKeCqkhAhHBR9A), in the CCT section, make sure that it is in order, with low priority at the end ### 2/5/2021 - Kristina: review website PRs - Jessica: Read/review NSF proposal ### 1/29/2021 - Kristina: create webinar page on group website - Jessica: Review/contribute to plant hydraulics review paper - David: Create content for first workshop ### 1/22/2021 - David & Kristina: brainstorm webinar title, topics, and schedule ### 1/15/2021 - Kristina: review/edit NASA PEcAn proposal ### 1/8/2021 - Kristina: ED2 OSF/repo documentation - [New OSF page](https://osf.io/a4p9n/wiki/Running%20PEcAn%20models%20on%20UA%20HPC/) ### 12/18/2020 - David: Syllabus for data science course at UA - Emily: Ticket [#341](https://github.com/AgPipeline/issues-and-projects/issues/341), reorganizing instruction order - Kristina: review Chris' website banner PR ### 12/11/2020 - David: Website stuff - Kristina: DIAG website URL ### 12/04/2020 - Chris: Script for video of CyVerse app - David: Reviewing steps required to publish website - [x] could someone please review / merge https://github.com/az-digitalag/group-website/pull/22/files? - Jessica: update sprint planning / retrospective https://osf.io/tzmhp/wiki/Sprint%20Meetings/ - Kristina: NEON dataset details in README ### 11/20/2020 - Chris: Drone group meeting agenda ### 11/13/2020 - Emily: DPP Documentation & created ticket asking Chris for some edit permissions - David website logo and header - this PR should fix the shadow issue https://github.com/KristinaRiemer/group-website/pull/1 - Kristina: NEON data README - Chris: (post official meeting time): researched how to add red UA identification bar to new group web site (HUGO-based) ### 11/06/2020 * working on data science help desk https://hackmd.io/@eywX1MatRnyBtYFBB3Gqwg/S1IG7W7KD * Chris: Went over issues on ZenHub & queried status of old, maybe forrgotten?, issues ### 10/30/2020 - David: ES faculty meeting presentation - Jessica: Review for Biogeosciences - Emily: Terraref traits readme ### 10/23/2020 - David: PI docs for Exosphere proposal - Emily: Cleaning up notes for pipeline steps - Kristina: review Exosphere proposal ### 10/09/2020 - Emily: Update soil data README [PR](https://github.com/genophenoenvo/soil-data/pull/2) - David: ODDPIG - Kristina: website ### 10/02/2020 - Ryan: CEA microbiome review paper - Jessica: Update OSF weekly meetings page with writing hour - Emily: - [x] quick write-up of notes from meeting with David while fresh on my brain - [x] finishing this [PR](https://github.com/terraref/brapi/pull/45) with description of contribution - David: - Website PRs - agenda for monday - created [agenda template](https://hackmd.io/2QyCDVKeTsO2fGQzBUjdNg?both) - updated [reviews, prev. meetings, presentations on OSF](https://osf.io/tzmhp/wiki/OKRs%20%26%20Quarterly%20Reviews/) - [2020 Q3 review / Q4 plan agenda](https://hackmd.io/CvgQXc7YR3yVz_g4VfA6fQ) ### 9/25/2020 - Chris: Working on slider header attributes - Jessica: Add self to website - Kristina: review job ad - David: ODDPIG email and survey ### 9/18/2020 - Kristina: - review Chris' website PR ([comment that needs followup discussion](https://github.com/az-digitalag/group-website/pull/17#issuecomment-695023123)) - start working on UA header issue - Emily: Work on finishing first draft of `Getting into Agricultural Data Science` resource list for others to review and edit - roadmap for writing up dpp requirements; compile lots of existing components ### 9/11/2020 - Chris: Resolving website [font issue](https://github.com/az-digitalag/organization/issues/262) - Kristina: review [job ad draft](https://docs.google.com/document/d/1LoF9YK3X2M5nvnSsId9bQ2fITyL37CMy3SzudxI_2MY/edit?ts=5f3c15f0) - Emily: Working on adding three different ways to access TERRA-REF data (OSF), based on level of experience - Jessica: writing interview answers for the twitter post ### 9/4/2020 - Kristina: GSOC final eval - Emily: Replace the [initial](https://github.com/az-digitalag/organization/issues/260) and non-descriptive OSF ticket with a more detailed [issue](https://github.com/az-digitalag/organization/issues/280) and defined, small tasks ### 8/28/2020 - Kristina: small group website improvements - [Light mode only PR](https://github.com/az-digitalag/group-website/pull/15) - [Updated adding people instructions PR](https://github.com/az-digitalag/group-website/pull/16) - David: BARD grant - Emily - Schedule / draft retweet of terra-ref's tweet about data paper - work on OSF [ticket](https://github.com/az-digitalag/organization/issues/260) with focus now on TERRA-REF data for CS&S hackathon :crossed_fingers: - Chris: - looking over documentation that inmpacts code and writing issues - onboarding checklist ### 8/21/2020 - Chris: Documenting how to run testing over the repositories with testing (as part of building test suites) - ### 8/14/2020 - Kristina - Merge website PRs - Write follow up issues - Work on CS&S stuff for Fatemah - Chris: Documenting other SciF apps (other than already documented) - David: finishing up PR, start working on DPP requirements - Emily: Budget justification ### 8/07/2020 - Kristina reviewing website PRs - David - submit PR for publications - update README - create new issues - Chris: not writing; working on issues with Julian's assistance ### 7/31/2020 * David: DARPA request for extension * Emily: OSF Project Pages and documentation * Chris: Updating SciF Canopy Cover README * Kristina: add details to [Jessica's onboarding plan](https://docs.google.com/document/d/1yrqONCVdS_3Uu1V96EongErxF927kBFrtgjeLY3479I/edit) + minor edits to OSF onboarding ### 7/24/2020 * David: curate anti Black racism tweets and / or convert to blog post * started curating content from our [notes](https://hackmd.io/pBvmWEpLRoyF4hMR9N3h5Q) * and drafting blog post in a [new hackmd](https://hackmd.io/XDtzy-AUScWLYEiiT1M_-g) * Emily: - [x] E-mail Larissa that we'll get back to her next week - [x] Incorporate feedback from Twitter survey into Guidelines draft and share with Team * Chris: * updating README for using FIELDimageR for plot GeoJSON to incorporate David's R extreme simplification * Working on Q2 newsletter ### 7/17/2020 * Chris: working on bringing DPP OSF site up to date * Kristina: [resolve David's website PR]() * Emily: ~~start Twitter Guidelines Draft~~ create survey to see how many people would actually like to be involved, and what they are willing to do - to help with drafting guidelines ### 7/10/2020 * David: Dryad updates * Kristina: OLS blog post (on [website](https://datascience.cals.arizona.edu/news/2020/07/successful-completion-open-life-science-program))! then plan group website hackathon [notes](https://hackmd.io/7buTmzT8THaClfKOSx6nqQ) * Ryan: Finish up Controlled Environment Agriculture review paper outline * Chris: Onboarding checklist for DPP ### 6/25/2020 * Emily: getting started in Ag data science resource guide * very rough [draft](https://hackmd.io/@eywX1MatRnyBtYFBB3Gqwg/S1WSyj108) * Kristina: prioritize website work [see plan here](https://github.com/az-digitalag/organization/issues/185#issuecomment-650326200), review [pull request #4](https://github.com/az-digitalag/group-website/pull/4) * David: curate anti Black racism tweets * started curating content from our notes https://hackmd.io/pBvmWEpLRoyF4hMR9N3h5Q * and drafting tweets in a new page https://hackmd.io/XDtzy-AUScWLYEiiT1M_-g ### 6/19/2020 Meeting with Caroline Mosley about marketing/communications #### Notes Intro: * Went over what we have (website, blog post, Twitter); only have audience defined somewhat for the first thing * What is our goal? Find/communicate with collaborators, measure outreach impact * Okay to start slowly and build Twitter: * Social media is a distribution method (get the word out). Need to follow/find the right people/groups and use the right hashtags and accounts to tag. * "Right" accounts = similar groups and people. * Consistency with Twitter: have one person in charge at time and keep a log. * Quote retweets are better than just retweeting. * What is the goal for Twitter? Narrow the scope and do that for a while, then can try something else. * Stuff on our website won't be seen unless we put it out there. * How to decide where to draw the line with who to follow, what to post, etc. Fine to start narrowly. * Brief guidelines from UA on social media use. Logo: * Can get added to [official directory](https://social.arizona.edu/social-directory) possibly? * Don't use A logo unless UA approves; it's okay to use our own Website: * Include key words on site so when people search for them the site comes up * Make it super obvious and simple. * Add "For Collaborators" section? * Lots of white space and images * Group everything into themes/tags * Minimal maintenance * This needs to be more obvious: services/products for scientists; enable others to do their work; "we want to help you do your science" * See [Services tab](https://datascience.cals.arizona.edu/services-overview) on old website * Core services (instead doing consulting type work through CCT) University resources: * Outside creative agencies to hire someone ($$$) * Biocommunications group? * Not much on campus that would be useful * [Forge](https://forge.arizona.edu/home) = UA entrepreneurial org * Tech launch = more about tech products ### 6/12/2020 * Three products: Twitter thread -> blog post -> OSF page * Content = resources and action items/TODOs * Audience! * Others at University of Arizona * Other primarily white academic groups? * Set up meeting with Caroline to learn about about public relations/communications methods 1. What is our communication goal for the organization? 2. How do we find our audience? 3. What media do we use for communications? 4. What is the "brand" 5. How do we use google analytics to inform our decisions? * Ex. Who's visiting the DIAG blog? Where are they coming from? * Ask CCT to pull analytic data for us to look at for next week - Emily - Kristina - David - Ryan ### 6/5/2020 * Kristina: revise OLS blog post, put ARDN post on old website and schedule Monday publication * Ryan: revise abstract for MDPI review paper. * Chris: adding information on Entry Point concept for Transformers ### 5/29/2020 * Kristina: write OLS blog post draft, review [David's website PR](https://github.com/az-digitalag/group-website/pull/4) * Chris: Make clarification changes to github.io documentation * Emily: review David's PR for group website - which @KristinaRiemer also still needs to review. . .because I may have missed something * investigating the `Related` people links Issue [#210](https://github.com/az-digitalag/organization/issues/210) ### 5/22/2020 * David: * Send out the [drone invitation email](https://hackmd.io/-Ubwk9ksSy6YF8ZlDwXQhQ) * Review Kristina's [blog post PR](https://github.com/az-digitalag/group-website/pull/5) * Emily: images PR * for blogposts use the addins--> blogdown --> images * for more general images (e.g. that will be used > once) they go into assets/images per Hugo Academic documentation https://sourcethemes.com/academic/docs/get-started/ * write reference e-mail * Kristina: edit ARDN hackathon post, start OLS post ### 5/15/2020 * Kristina: [ARDN hackathon blog post](https://github.com/az-digitalag/group-website/pull/5) * Emily: Impression of Interview from yesterday (in the google doc) * Start notes on SPARCd Meeting (not uploaded anywhere yet) * David: Drone Drone community invitation email https://hackmd.io/-Ubwk9ksSy6YF8ZlDwXQhQ * Chris: working on roadmap for DPP https://app.zenhub.com/workspaces/drone-processing-pipeline-5e7e97f39771620e1b5a8893/roadmap ### 5/8/2020 * Kristina: ARDN hackathon blog post outline * Emily: Finish draft of CALS Collaboration Projects * [Draft Link](https://docs.google.com/document/d/14hbua487eVh_x3PwCWI1ZXtpRUfvoiWtmXVliIqW_xE/edit?usp=sharing) * Start OLS Presentation _very rough_ [Draft](https://docs.google.com/presentation/d/1RporXVWKm9IOvRLl0dalqpPyKpy_SRmZ_PaATkAhi84/edit?usp=sharing) ### 5/01/2020 * David ... will continue work on website / people * Kristina: [ARDN TERRA REF presentation](https://docs.google.com/presentation/d/1iL7MUESmwKzVLuPhxu7Wp9cIsZ8dL8hdP0fFA8Pvxhc/edit?usp=sharing) * Emily: preparing answers to moderated questions for Alumni Panel on Monday ### 4/24/2020 ~~For anyone who attended, co-write a blog post about WiDS?~~ * David: will review Emily's PR and work on website * Chris: Drone quarterly newsletter * Emily: Write instructions for adding a blog post to group website * Kristina: improve OSF notes based on sprint meeting notes ### 4/10/2020 * Kristina * [Diagram](https://docs.google.com/presentation/d/1_3e-JYM2a8NzRcSDYHiunMSbb1ogse56mxGNVKU4t0M/edit#slide=id.p) for [project management paper](https://docs.google.com/document/d/1wSENaSjo5kmL7_ewTQg8-PqyoTcApmVKS0Nnmny4cgE/edit) * David * data paper --> sensors section * Emily * Quarterly Review Presentation * Ryan * abstract for perspective paper * Chris * OKRs and Quarterly Review presentation ### 4/3/2020 * Kristina: group website * Create people section, add David and myself * Can't figure out how to get pictures on home cards to show up!!! Grrr... * Emily: group website * fork and clone to local machine * keep notes on process to add to README or CONTRIBUTING * Chris: [documenting solutions](https://drive.google.com/file/d/1S_gOpcxT9MysqkIyaVIvObkTJ78Et4r5/view?usp=sharing) to Drone Pipeline concerns (see [Julian's notes](https://hackmd.io/5EA9gHTkQy2fFFFGo8gsVQ#2020-04-02) on this topic) * David: * Preparing talk on my communication style for Toastmasters meeting ### 3/27/2020 Nice overview for scientific writing: https://www.nature.com/articles/d41586-019-02918-5 * Chris: working on SPIE paper & roadmap * Ryan: more stats course content crafting. :-) * Kristina: continuing working on customizing website * our new website is live!!! https://quizzical-perlman-731692.netlify.com/ with automatic deploy * Emily: Contributor Personas & Pathways (OLS Assignment) - [entry-level user](https://docs.google.com/document/d/1NN3w2jWYvPaYVJ1IMONxnclYwjSmMV8eiAHkGreucOI/edit?usp=sharing) * David: Review SPIE paper ### 3/20/2020 * Chris: working on SPIE paper * Ryan: working on stats short course content * Kristina: start [the Hugo academic website](https://github.com/az-digitalag/group-website) * David: Dryad data paper readme * Emily: Review OSF Project Management pages and edit as needed ### 3/13/2020 * Emily: finish blog post ### 3/6/2020 * Kristina: further developing [project management paper outline](https://docs.google.com/document/d/1wSENaSjo5kmL7_ewTQg8-PqyoTcApmVKS0Nnmny4cgE/edit), reviewing Emily's blog post * Chris: Starting paper for SPIE * David: Dryad Data paper readme * Emily: Finish [draft](https://docs.google.com/document/d/1_esn2zog4s1mg4nKI4I5EAn7UFVq8i3N9xHS2bJHy24/edit?usp=sharing) for FOSS blog post to be reviewed, review Kristina's paper outline * Julian: Data transfer workflow document * [UA Pipeline Design - DRAFT](https://docs.google.com/document/d/19q5kcsyW2hqNWJEaWkSl16s08ZAfdfLVBYTBzQiT3zE/edit#) ### 2/27/2020 *Thursday is the new Friday* * Kristina: working on notes for [project management paper](https://docs.google.com/document/d/1wSENaSjo5kmL7_ewTQg8-PqyoTcApmVKS0Nnmny4cgE/edit), editing pipeline job ad tweet * Ryan: working on rewriting genotypic data section of the [GenoPhenoEvo paper](https://docs.google.com/document/d/1cPmiusLru1KMYVCoZ4gO8czykqm4p13ReZaAuZxzF3A/edit?usp=sharing) * Julian: Hugo template with UA-CALS branding * Progress: I think I understand the Arizona Bootstrap setup now * Emily: FOSS blogpost * David: tweeting about pipeline job ### 2/14/2020 *Used Pomodoro technique for session* * Kristina: finishing [up goer five version of OLS vision statement](https://cyverse.slack.com/archives/CQAATRMCM/p1581700257054600?thread_ts=1581700244.054300&cid=CQAATRMCM), finish draft of rstudio::conf blog post, post and tweet blog post? * Jorge: Updating [Agpipeline repo](https://github.com/AgPipeline/AgPipeline.github.io) with documentation on new lidar template * Julian: What is the problem with the data transfer? * <https://hackmd.io/p8AYTvmvQ4OEcBBy1woGZg> * Gantry to NCSA * Gantry to UA * Why is this a problem (hint: making space on cache server) ### 2/7/2020 * Kristina: starting [blog post about rstudio::conf](https://datascience.cals.arizona.edu/news/2020/02/rstudioconf-workshop-2020) * David: * post from last week update and tweet https://twitter.com/DigitalAgGroup/status/1225834368226086913?s=20 * work on READMEs * Emily: Comment on [another team's](https://github.com/open-life-science/ols-1/issues/10) OLS project and [respond to questions](https://github.com/open-life-science/ols-1/issues/12) about our project on Github issue * Julian: writing code !?! (this is blasphemy) (https://giphy.com/gifs/mrw-mods-bethesda-vX9WcCiWwUF7G) * Jorge: Documentation for new transfomer ### 1/31/2020 ~~Someone should tweet about the first OLS cohort call!~~ * David: Blog post about PAG presentation * Julian: Hugo Academic website css styling * Chris: documenting various loose ends * Jorge: Documenting ED2 model implementation on hpc. ### 1/24/2020 - Emily - tweet about first mentorship session - Draft: `3 members of our team - @dlebauer, @KristinaRiemer, & @magic_milly had our first meeting with Katrin Leinweber for @openlifesci, and we're excited to have a mentor with such great experience contributing to open source software documentation! Our proposal: shorturl.at/bnwCI` - list which specific members of our team? - Say something else about our project? add proposal: https://github.com/az-digitalag/organization/blob/master/proposals/openlifescience_2020.md - Chris - Misc reading/writing and catching up - Ryan - Biography for group website - Start outlining "perspective paper" - Kristina - start [offboarding page](https://osf.io/tzmhp/wiki/Offboarding/) on group OSF - ### 1/17/2020 Anyone who is interested should review [the draft of the job ad](https://docs.google.com/document/d/1D_hqht_gKeOMk-poE1ki7sYEz8OwBSxwA5wgdpNuJv4/edit) for the Darpa programmer * Kristina: refining/adding to [DARPA programmer ad](https://docs.google.com/document/d/1D_hqht_gKeOMk-poE1ki7sYEz8OwBSxwA5wgdpNuJv4/edit) (for ten minutes) * David: Job Ad + Website project page * Jorge: Cyverse DE App quick-guide * Mills the Magical: ### 1/10/2020 Someone should tweet about our quarterly retreat, including the group pic! * Kristina: start ad for new programmer (draft in [this Google Doc](https://docs.google.com/document/d/1D_hqht_gKeOMk-poE1ki7sYEz8OwBSxwA5wgdpNuJv4/edit)) * Chris: Working with Emily on Tweet @ drone pipeline * Magic Mills: Engage with the twitterverse with Chris & Kristina. Please edit and add @'s or hashtags if I forgot something * Tweet Draft: `Our team at @uarizona developed an open prototype for processing #UAV crop imagery. Let us know if you'd like more information! https://osf.io/xdkcy/wiki/home/` * Jorge: Write readme and docs for new transfomer ### 1/3/2020 * Kristina: * OLS acceptance content (to be published Monday Jan 6): * Proposal on GitHub * Blog post on our website: https://datascience.cals.arizona.edu/news/2019/12/diag-accepted-open-life-science-program * Tweet draft: ```We are very excited to announce that our group is part of the first cohort of the @openlifesci program! We will work with a mentor to make our open data and software more accessible to community members by improving documentation. For more info, check out our proposal and related blog post: [link] [link] #openscience``` * Emily: minor OSF edits, curating blog posts / articles for a link roundup tweet (thank you Kristina for showing me how to use TweetDeck), making sure our account is following partners and that we are getting Twitter notifications for interacting ### 12/20/19 * Kristina: blog post (working draft [here](https://docs.google.com/document/d/10eSnC2sgDXOerdx9aoNGhyyotTcUECAYwjZpPKz3lbA/edit?folder=1D0ui4XHx7w_tzdjH48DfsZ6apUIE3lg0)) & tweet about Open Life Science acceptance, review David's conference abstract * Chris: finish up documenting transformers * Emily: come up with blog post idea, figure out Tweet Deck, some OSF updates * Jorge: Document Jupyter notebook transformer stuff, final once over of docs for last testing image, keeping a blog post in my head somewhere ### 12/13/19 * Kristina: [Google Summer of Code](https://summerofcode.withgoogle.com/) application for our group, starting notes [here](https://docs.google.com/document/d/1I_YIZGrDX8X3tn1LzANWEhb-7M1yZo_jyPBVrP03xJc/edit) * David: Website projects * Chris: Continue documenting transformers * Jorge: Documenting TravisCI build README * Emily: README Metadata and directory structure ### 12/6/19 * Kristina: [Open Life Science application](https://docs.google.com/document/d/167JTkqQ9RlwqLX_az3hn167rXevwvKjr9lHY1phwp9I/edit#) * Emily: Metadata - using Cornell [guidelines](https://data.research.cornell.edu/content/readme) / ideas about Open Life Science program * Chris: AgPipeline documentation and OSF updates * Jorge: Documentation for testing ### 11/22/19 * Julian: show us how to use Pomodoro technique for writing approach (https://tomato-timer.com/) * Kristina * TODO: finish adding content (text blurb, links, picture) for all main projects to group website ### 11/15/19 * Kristina * [tweet](https://twitter.com/DigitalAgGroup/status/1195408600988082176) from new Twitter account * add content to overview projects page on group website * Emily: start news article / blog for website * Jorge: Document tests and review news article draft * Chris: working on documenting how to write an extractor ### 11/8/19 * Emily: Add profile to group [website](https://datascience.cals.arizona.edu/people); fix [node:person] * Jorge: Make a news article introducing myself * Kristina: create [group's Twitter account](https://twitter.com/DigitalAgGroup) and first tweet ### 11/1/19 * Kristina: create log, start group Twitter protocol notes in [OSF public communications page](https://osf.io/tzmhp/wiki/Public%20Communications/) * Chris: [README.md](https://github.com/AgPipeline) updates for running transformer containers * Jorge: Editing my person section of the group [website](https://datascience.cals.arizona.edu/person/jorge-barrios). * Julian: Enable projects menu ([GitHub issue](https://github.com/az-digitalag/organization/issues/119)) * Seemed like this was already in progress. Added comment for David to give direction here * Also the experience makes me want to try out Hugo (or _anything_ else, [besides Wix])

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