## easyconfigs merge sprint (Oct 2023)

### status

- 2023-10-22 (15:30 CEST)
- 792 open easyconfig PRs

### 2023-10-23 merge sprint participants

Are you joining the merge sprint? Mention here what you plan to work on...

* Kenneth (`@boegel`, maintainer): closing/merging old PRs, revisiting own PRs that did not get merged yet, merging recent PRs (low-hanging fruit)
* Åke (`@akesandgren`, maintainer): closing/merging old PRs, working on some related easyblocks
* Thomas (`@trz42`, troll): closing/merging old PRs
* Jörg (`@sassy-crick`, contributor): going through my PRs and close as appropirate

### Deprecated toolchains

see https://docs.easybuild.io/policies/toolchains

- `*/2020a` (GCC 9.3.0) + anything older (see also [common toolchains overview](https://docs.easybuild.io/common-toolchains/#common_toolchains_overview))

### Oldest 100 easyconfig PRs (updated 2023-10-22)

**If you plan to work on cleaning up some of the oldest PRs listed below:**
* Add your name in the `participants` section above as `maintainer` or `contributor`
* Join the `#merge-sprint` channel in the EasyBuild Slack to synchronize with others
* Add your name at the front of the line, for example: `(Kenneth) [#10725] ...`
* Close or merge the PRs, then move (cut-and-paste) the line to the corresponding subsection below
* Take into account deprecated toolchains (see above): PRs that (only) include easyconfigs that use a deprecated toolchain version can be *closed*
* Please add a clear comment to explain why the PR was closed, like:

      Closing this PR, since it (only) uses deprecated toolchain versions,
      see https://docs.easybuild.io/policies/toolchains .

[#11148](https://github.com/easybuilders/easybuild-easyconfigs/pull/11148) (by `@Flamefire`) `Remove whitespace at EOL from ECs`
[#11161](https://github.com/easybuilders/easybuild-easyconfigs/pull/11161) (by `@mboisson`) `{bio}[GCC/9.3.0] SRA-Toolkit v2.10.8`
[#11574](https://github.com/easybuilders/easybuild-easyconfigs/pull/11574) (by `@mboisson`) `{data}[GCC/9.3.0] netCDF.Serial v4.7.4`
[#11598](https://github.com/easybuilders/easybuild-easyconfigs/pull/11598) (by `@mboisson`) `{tools}[GCC/9.3.0] ecCodes v2.19.0`
[#11688](https://github.com/easybuilders/easybuild-easyconfigs/pull/11688) (by `@jordiblasco`) `{bio}[system/system] CNS v1.31`
[#11689](https://github.com/easybuilders/easybuild-easyconfigs/pull/11689) (by `@jordiblasco`) `{bio}[foss/2019b] HADDOCK v2.4-2020-09`
(Åke) [#11695](https://github.com/easybuilders/easybuild-easyconfigs/pull/11695) (by `@boegel`) `{devel}[gompi/2020b,iimpi/2020b] Boost.MPI v1.74.0`
[#11738](https://github.com/easybuilders/easybuild-easyconfigs/pull/11738) (by `@boegel`) `fix installation of vsc-base 2.8.3 by switching to PythonBundle`
[#11754](https://github.com/easybuilders/easybuild-easyconfigs/pull/11754) (by `@kirousankaran`) `{chem}[iomkl/2020.4.304] QuantumESPRESSO: v6.6 plus dependencies`
[#11781](https://github.com/easybuilders/easybuild-easyconfigs/pull/11781) (by `@boegel`) `{lib,perf}[iimpi/2020a,intel/2020a] mympingpong v0.8.1, mpi4py v3.0.3 w/ Python 3.8.2`
[#11786](https://github.com/easybuilders/easybuild-easyconfigs/pull/11786) (by `@terjekv`) `{devel,vis}[fosscuda/2019b] torchvision v0.8.1, PyTorch v1.7.0 w/ Python 3.7.4, with MKL`
[#11975](https://github.com/easybuilders/easybuild-easyconfigs/pull/11975) (by `@boegel`) `{cae}[intel/2020b] OpenFOAM v8, ParaView v5.8.1, CGAL v5.2`
[#12061](https://github.com/easybuilders/easybuild-easyconfigs/pull/12061) (by `@Flamefire`) `Add UCX and PMIx to OpenMPI-3.1.4-gcccuda-2019b`
[#12109](https://github.com/easybuilders/easybuild-easyconfigs/pull/12109) (by `@sassy-crick`) `{vis}[GCC/10.2.0] VirtualGL bumped up to 2.6.5`
[#12118](https://github.com/easybuilders/easybuild-easyconfigs/pull/12118) (by `@tardigradus`) `{lib,vis}[foss/2020a] librsvg v2.50.2, libcroco v0.6.13`
[#12134](https://github.com/easybuilders/easybuild-easyconfigs/pull/12134) (by `@guimaluf`) `{bio}[GCC/10.2.0]Add easyconfig: PRIMUS-1.9.0`
[#12135](https://github.com/easybuilders/easybuild-easyconfigs/pull/12135) (by `@guimaluf`) `{math}[GCC/8.3.0] OpenBUGS v3.2.3`
[#12139](https://github.com/easybuilders/easybuild-easyconfigs/pull/12139) (by `@sassy-crick`) `{vis}[GCCcore/10.2.0] zbar 0.23.91 `
[#12152](https://github.com/easybuilders/easybuild-easyconfigs/pull/12152) (by `@boegel`) `{bio}[foss/2020b] EUKulele v1.0.4, TransDecoder v5.5.0, CD-HIT v4.8.1, ... w/ Python 3.8.6`
[#12170](https://github.com/easybuilders/easybuild-easyconfigs/pull/12170) (by `@surak`) `Update OpenAI-Gym-0.17.1-foss-2019b-Python-3.7.4.eb`
[#12193](https://github.com/easybuilders/easybuild-easyconfigs/pull/12193) (by `@boegel`) `{bio}[foss/2020b] BUSCO v4.1.2 w/ Python 3.8.6`
[#12209](https://github.com/easybuilders/easybuild-easyconfigs/pull/12209) (by `@genio0815`) `{lib}[system/system] popt v1.18`
[#12238](https://github.com/easybuilders/easybuild-easyconfigs/pull/12238) (by `@ccoulombe`) `{bio}[GCC/9.3.0] GUDHI v3.4.1 w/ Python 3.6 + 3.7 + 3.8`
[#12275](https://github.com/easybuilders/easybuild-easyconfigs/pull/12275) (by `@besserox`) `{math}[foss/2020a,intel/2020a] Dakota v6.11.0 w/ Python 3.8.2`
[#12291](https://github.com/easybuilders/easybuild-easyconfigs/pull/12291) (by `@patbel-pwr`) `[Bison-3.7.1] Fix build error on old GCC`
[#12334](https://github.com/easybuilders/easybuild-easyconfigs/pull/12334) (by `@verdurin`) `{bio}[system/system] BOLT-LMM v2.3.4`
[#12353](https://github.com/easybuilders/easybuild-easyconfigs/pull/12353) (by `@zdemat`) `{lib}[fosscuda/2019b] reikna v0.7.5 w/ Python 3.7.4 `
[#12361](https://github.com/easybuilders/easybuild-easyconfigs/pull/12361) (by `@robert-mijakovic`) `{lang}[system/system] Java v15.0.2`
[#12393](https://github.com/easybuilders/easybuild-easyconfigs/pull/12393) (by `@fizwit`) `{bio}[foss/2020b] EPACTS 3.3.2`
[#12430](https://github.com/easybuilders/easybuild-easyconfigs/pull/12430) (by `@stevecdavis`) `{bio}[foss/2019b] BRAKER v2.1.5, GeneMark-ET v4.65, spaln v2.4.03`
[#12445](https://github.com/easybuilders/easybuild-easyconfigs/pull/12445) (by `@ComputeCanada`) `made .gitignore to exclude everything other than a few exceptions, ra…`
[#12477](https://github.com/easybuilders/easybuild-easyconfigs/pull/12477) (by `@levlafayette`) `Create alf-2.1-foss-2019b.eb`
[#12478](https://github.com/easybuilders/easybuild-easyconfigs/pull/12478) (by `@levlafayette`) `Create alf_2.1_make.patch`
[#12500](https://github.com/easybuilders/easybuild-easyconfigs/pull/12500) (by `@ThomasHoffmann77`) `{base}[foss/2020b,fosscuda/2020b] sh_alignment v0.993 w/ Python 3.8.6`
[#12504](https://github.com/easybuilders/easybuild-easyconfigs/pull/12504) (by `@ThomasHoffmann77`) `{base}[foss/2020b] PyTom v0.993, PyTom v0.994 w/ Python 3.8.6`
[#12545](https://github.com/easybuilders/easybuild-easyconfigs/pull/12545) (by `@fizwit`) `{bio}[Java] Beagle 5.2`
[#12561](https://github.com/easybuilders/easybuild-easyconfigs/pull/12561) (by `@rarensu`) `{bio}[intel/2019b] anvio 7 Python-3.7.4`
[#12575](https://github.com/easybuilders/easybuild-easyconfigs/pull/12575) (by `@Flamefire`) `Remove duplicate perl modules and add CI check`
[#12577](https://github.com/easybuilders/easybuild-easyconfigs/pull/12577) (by `@ThomasHoffmann77`) `{bio}[foss/2020b] APBS v3.0.0 w/ Python 3.8.6`
[#12581](https://github.com/easybuilders/easybuild-easyconfigs/pull/12581) (by `@ThomasHoffmann77`) `{lib}[GCCcore/10.2.0] OpenVR v1.0.17`
[#12582](https://github.com/easybuilders/easybuild-easyconfigs/pull/12582) (by `@ThomasHoffmann77`) `{vis}[foss/2020b] PyMol v2.4.0 w/ Python 3.8.6`
[#12587](https://github.com/easybuilders/easybuild-easyconfigs/pull/12587) (by `@ThomasHoffmann77`) `{chem}[foss/2020b] pdb2pqr v3.1.0 w/ Python 3.8.6`
[#12667](https://github.com/easybuilders/easybuild-easyconfigs/pull/12667) (by `@boegel`) `fix installation of TensorFlow 2.4.1 with foss/2020b on aarch64`
[#12687](https://github.com/easybuilders/easybuild-easyconfigs/pull/12687) (by `@boegel`) `improve check for multi-variant dependencies per generation of easyconfigs`
[#12717](https://github.com/easybuilders/easybuild-easyconfigs/pull/12717) (by `@akesandgren`) `{vis}[gompi/2020b,gompic/2020b] Grace v5.1.25`
[#12748](https://github.com/easybuilders/easybuild-easyconfigs/pull/12748) (by `@verdurin`) `{bio}[GCCcore/6.4.0] SUGEN v8.1`
[#12800](https://github.com/easybuilders/easybuild-easyconfigs/pull/12800) (by `@cmeesters`) `rmats-turbo contrib v4.1.1`
[#12812](https://github.com/easybuilders/easybuild-easyconfigs/pull/12812) (by `@fizwit`) `{bio}[foss/2020b] Trinity 2.12.0`
[#12813](https://github.com/easybuilders/easybuild-easyconfigs/pull/12813) (by `@verdurin`) `{bio}[foss/2020a] GEMMA v0.98.4`
[#12835](https://github.com/easybuilders/easybuild-easyconfigs/pull/12835) (by `@volodymyrss`) `HEASoft package https://heasarc.gsfc.nasa.gov/lheasoft/`
[#12860](https://github.com/easybuilders/easybuild-easyconfigs/pull/12860) (by `@rarensu`) `{data}[foss/2020b] update ROOT 6.24.00`
[#12862](https://github.com/easybuilders/easybuild-easyconfigs/pull/12862) (by `@rarensu`) `{data}[foss/2018b,foss/2019b] fix configure options for ROOT v6.14.06 and v6.20.04`
[#12875](https://github.com/easybuilders/easybuild-easyconfigs/pull/12875) (by `@ThomasHoffmann77`) `{bio}[GCCcore/10.2.0] Modeller v10.2 w/ Python 2.7.18 + 3.8.6`
[#12895](https://github.com/easybuilders/easybuild-easyconfigs/pull/12895) (by `@akesandgren`) `{vis}[foss/2020b] Nipype v1.6.0 w/ Python 3.8.6`
[#12905](https://github.com/easybuilders/easybuild-easyconfigs/pull/12905) (by `@jordiblasco`) `Fix BWA hardcoded Makefile issues and remove unneeded dependency`
[#12908](https://github.com/easybuilders/easybuild-easyconfigs/pull/12908) (by `@jfgrimm`) `{bio}[foss/2020b] GADMA v2.0.0rc12 w/ Python 3.8.6`
[#12928](https://github.com/easybuilders/easybuild-easyconfigs/pull/12928) (by `@zdemat`) `{vis}[intelcuda/2020b] OpenCV v4.5.1-contrib`
[#12936](https://github.com/easybuilders/easybuild-easyconfigs/pull/12936) (by `@jfelipe-francogonzalez`) `{bio}[GCC/10.2.0] svaba v1.1.0`
[#12951](https://github.com/easybuilders/easybuild-easyconfigs/pull/12951) (by `@jfelipe-francogonzalez`) `{tools}[foss/2020a] launcher v3.7`
[#13016](https://github.com/easybuilders/easybuild-easyconfigs/pull/13016) (by `@rarensu`) `{data}[intel/2020b] update PnetCDF with newer intel 2020b toolchain`
[#13017](https://github.com/easybuilders/easybuild-easyconfigs/pull/13017) (by `@rarensu`) `{geo}[intel/2020b] update CESM-deps to newer intel 2020b toolchain.`
[#13018](https://github.com/easybuilders/easybuild-easyconfigs/pull/13018) (by `@rarensu`) `{tools}[GCCcore/10.2.0] Subversion 1.10.7`
[#13038](https://github.com/easybuilders/easybuild-easyconfigs/pull/13038) (by `@robert-mijakovic`) `{base}[GCC/10.3.0] Kokkos v3.4.01`
[#13043](https://github.com/easybuilders/easybuild-easyconfigs/pull/13043) (by `@kErica`) `{bio}[GCC/8.3.0] Gautomatch v0.56`
[#13050](https://github.com/easybuilders/easybuild-easyconfigs/pull/13050) (by `@robert-mijakovic`) `{tools}[system/system] Arm-Forge v21.0.2`
[#13058](https://github.com/easybuilders/easybuild-easyconfigs/pull/13058) (by `@robert-mijakovic`) `{numlib}[GCC/10.3.0,gompi/2021a] libFLAME v3.0, ScaLAPACK v3.0`
[#13105](https://github.com/easybuilders/easybuild-easyconfigs/pull/13105) (by `@kErica`) `{bio}[GCCcore/9.3.0] cutadapt v3.4 w/ Python 3.8.2`

### Merged

- [#12319](https://github.com/easybuilders/easybuild-easyconfigs/pull/12319) (by `@sassy-crick`) `{lib}[GCCcore/10.2.0] New EC for libcotp and libbaseencode created`
- [#13045](https://github.com/easybuilders/easybuild-easyconfigs/pull/13045) (by `@boegel`) `{data}[foss/2020b] harmony v0.1.0-20210528`
-

### Closed

[#10725](https://github.com/easybuilders/easybuild-easyconfigs/pull/10725) (by `@SimonPinches`) `{vis}[GCCcore/9.3.0] TTK v0.9.8.9, zfp v0.5.5, PyQt5 v5.13.2 w/ Python 3.8.2`
[#10985](https://github.com/easybuilders/easybuild-easyconfigs/pull/10985) (by `@DininduSenanayake`) `add VelvetOptimiser-2.2.5-GCC-9.2.0`
[#11103](https://github.com/easybuilders/easybuild-easyconfigs/pull/11103) (by `@mboisson`) `{bio}[GCC/9.3.0] BioBloomTools v2.3.2-20200731`
[#11108](https://github.com/easybuilders/easybuild-easyconfigs/pull/11108) (by `@mboisson`) `{bio}[GCC/9.3.0] blasr_libcpp v5.3.4`
[#11153](https://github.com/easybuilders/easybuild-easyconfigs/pull/11153) (by `@rtripath89`) `Easyconfig for OpenSCAD v2019.05`
[#11165](https://github.com/easybuilders/easybuild-easyconfigs/pull/11165) (by `@boegel`) `{cae}[foss/2019b] waves2Foam v20200703`
[#11176](https://github.com/easybuilders/easybuild-easyconfigs/pull/11176) (by `@fizwit`) `New to EB, DNA methylation tool`
[#11180](https://github.com/easybuilders/easybuild-easyconfigs/pull/11180) (by `@boegel`) `{lang}[foss/2020a] Julia v1.5.1`
[#11199](https://github.com/easybuilders/easybuild-easyconfigs/pull/11199) (by `@SimonPinches`) `{devel}[GCCcore/9.3.0] PySide2 v5.14.1, Shiboken2 v5.14.1 w/ Python 3.8.2`
[#11214](https://github.com/easybuilders/easybuild-easyconfigs/pull/11214) (by `@SimonPinches`) `{vis}[foss/2020a,intel/2020a] PyQtGraph v0.11.0 w/ Python 3.8.2`
[#11235](https://github.com/easybuilders/easybuild-easyconfigs/pull/11235) (by `@SimonPinches`) `{tools}[intel/2020a] udocker v1.1.4 w/ Python 2.7.18`
[#11286](https://github.com/easybuilders/easybuild-easyconfigs/pull/11286) (by `@henkela`) `{tools}[gompi/2020a] darshan v3.2.1`
[#11288](https://github.com/easybuilders/easybuild-easyconfigs/pull/11288) (by `@henkela`) `{tools}[gompi/2020a,iimpi/2020a] NCO v4.9.3`
[#11289](https://github.com/easybuilders/easybuild-easyconfigs/pull/11289) (by `@henkela`) `{data}[foss/2020a,intel/2020a] netcdf4-python v1.5.4 w/ Python 3.8.2`
[#11292](https://github.com/easybuilders/easybuild-easyconfigs/pull/11292) (by `@rokzitko`) `{phys}[foss/2020a] NRGLjubljana v2020.09, NRGLjubljana_interface v3.0.0 w/ Python 3.8.2`
[#11293](https://github.com/easybuilders/easybuild-easyconfigs/pull/11293) (by `@henkela`) `{tools}[iimpi/2020a,system/system] ecCodes_definitions v2.12.5-2, ecCodes v2.18.0`
[#11294](https://github.com/easybuilders/easybuild-easyconfigs/pull/11294) (by `@lexming`) `{bio}[GCC/9.3.0,gompi/2020a] RAxML v8.2.12`
[#11377](https://github.com/easybuilders/easybuild-easyconfigs/pull/11377) (by `@ULHPC`) `{cae}[intel/2020a] Salome v8.5.0`
[#11379](https://github.com/easybuilders/easybuild-easyconfigs/pull/11379) (by `@ULHPC`) `{vis}[intel/2020a] VMD v1.9.3 w/ Python 2.7.18`
[#11446](https://github.com/easybuilders/easybuild-easyconfigs/pull/11446) (by `@alirezaghavaminia`) `{cae}[foss/2020a] SU2 v7.0.6 w/ Python 3.8.2`
[#11463](https://github.com/easybuilders/easybuild-easyconfigs/pull/11463) (by `@jedokaplan`) `{tools}[gompi/2020a] YAXT v0.6.2`
[#11496](https://github.com/easybuilders/easybuild-easyconfigs/pull/11496) (by `@boegel`) `{geo}[intel/2019b] WRF v3.8.0`
[#11576](https://github.com/easybuilders/easybuild-easyconfigs/pull/11576) (by `@hajgato`) `{chem}[intel/2019b] LAMMPS patch_20Nov2019`
[#11583](https://github.com/easybuilders/easybuild-easyconfigs/pull/11583) (by `@boegel`) `don't use pip to install mympingpong + add sanity check command to catch broken installation`
[#11652](https://github.com/easybuilders/easybuild-easyconfigs/pull/11652) (by `@verdurin`) `{bio}[foss/2019b,foss/2020a] FastQ_Screen v0.14.1, GDGraph v1.54`
[#11685](https://github.com/easybuilders/easybuild-easyconfigs/pull/11685) (by `@jordiblasco`) `{phys}[foss/2019b] GetFEM v5.4.1`
[#11686](https://github.com/easybuilders/easybuild-easyconfigs/pull/11686) (by `@jordiblasco`) `{devel}[gompi/2019b] libzeep v3.0.5`
[#11700](https://github.com/easybuilders/easybuild-easyconfigs/pull/11700) (by `@jordiblasco`) `{bio}[foss/2019b] PyMOL v2.4.1_198 w/ Python 3.7.4`
[#11719](https://github.com/easybuilders/easybuild-easyconfigs/pull/11719) (by `@verdurin`) `{bio}[foss/2019b,foss/2020a] iVar v1.3`
[#11731](https://github.com/easybuilders/easybuild-easyconfigs/pull/11731) (by `@levlafayette`) `Create p/pugixml/pugixml-1.10-GCCcore-8.3.0.eb`
[#12178](https://github.com/easybuilders/easybuild-easyconfigs/pull/12178) (by `@verdurin`) `{bio}[foss/2019b] RAVEL v1.3.5`
[#14150](https://github.com/easybuilders/easybuild-easyconfigs/pull/14150) (by `@sassy-crick`) `{bio}[GCCcore/10.3.0] BGEN v1.1.7`
[#14171](https://github.com/easybuilders/easybuild-easyconfigs/pull/14171) (by `@sassy-crick`) `{bio}[GCC/10.3.0] Regenie v2.2.4`
[#15245](https://github.com/easybuilders/easybuild-easyconfigs/pull/15245) (by `@sassy-crick`) `{bio}[GCCcore/11.2.0] Health-GPS v20220316`
[#15656](https://github.com/easybuilders/easybuild-easyconfigs/pull/15656) (by `@sassy-crick`) `{bio}[GCC/11.2.0] IGoR v1.4.0`
[#13535](https://github.com/easybuilders/easybuild-easyconfigs/pull/13535) (by `@sassy-crick`) `{chem}[foss/2020a,foss/2020b] GULP v6.0`
[#15869](https://github.com/easybuilders/easybuild-easyconfigs/pull/15869) (by `@sassy-crick`) `{chem}[foss/2021b] LAMMPS v29Sep2021 update3`
[#16266](https://github.com/easybuilders/easybuild-easyconfigs/pull/16266) (by `@sassy-crick`) `{vis}[foss/2021b] wxPython v4.2.0 w/ Python 3.9.6`
[#16523](https://github.com/easybuilders/easybuild-easyconfigs/pull/16523)
(by `@sassy-crick`) `{vis}[foss/2021a] wxPython v4.1.0 w/ Python 3.9.5`