# 23.5.2024 DDLS education and training
## 7th meeting with DDLS fellows

## **Code of Conduct reminder**
* Be respectful, honest, inclusive, accommodating, appreciative, and open to learning from everyone else.
* Do not attack, demean, disrupt, harass, or threaten others or encourage such behavior.
* Be patient, allow others to speak, and use the zoom reactions & chat if you would like to voice something.
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## **Links & Resources**

**Zoom link** https://umu.zoom.us/j/69332625597
**Miro board** https://miro.com/app/board/uXjVPZVPbOU=/?share_link_id=7147612421
**Training collection** https://docs.google.com/spreadsheets/d/18hSpGPnQvnyCeIeT-Ru0nu764Qi8mZWCqfIYgld33Rw/edit?usp=sharing
**NBIS course catalogue** (https://uppsala.instructure.com/courses/48087/pages/nbis-training-catalogue)
**ELIXIR TeSS (European training event catalogue)** (https://tess.elixir-europe.org/)
**SciLifeLab training events** (https://training.scilifelab.se/)
*email ([e-mail]) if you like to add a course/event to the SciLifeLab calendar*
**GU and GU core facility training** (https://www.gu.se/en/core-facilities/bioinformatics-and-data-center-bdc/education-and-training)
**Glittr.org: Github repository for Bioinformatics training materials** (https://glittr.org/?per_page=25&sort_by=stargazers&sort_direction=desc)
**SIB (Swiss Insitute for Bioinformatics): e-learning collection** (https://www.sib.swiss/training/e-learning)

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## Rollcall:
🗣 Name/🐸 pronouns/✍Reseach Area/🏼 Affiliation/
* Nina Norgren / she-her/ Training Manager / SciLifeLab and NBIS
* Tobias Andermann / he-him / DDLS fellow evolution and biodiversity / Uppsala University
* Wei Ouyang ///
* Luisa Hugerth / she / DDLS fellow infection / UU
* Clemens Wittenbecher ///
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## **AGENDA**
| Activity |
| -------- |
| 1. Welcome and introductions|
| 2. Re-cap previous meetings|
| 3. **DDLS courses** - Any new courses you are setting up? Current courses or trainings that could be DDLS branded? Need for teachers? |
| 4. Any other business? |
| 5. Next steps and wrap-up |

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## Re-cap previous meetings

> ### Issues raised
> Can a course be both a DDLS course and a NDPIA course?

From DDLS side, yes they can

## DDLS courses

### Data-driven Life Sciences
Course website: https://ddls.aicell.io/course/ddls-2024/
Organised by: Wei Ouyang

Update on progress by Wei.
- Plans for a week long hackathon in Solna, not only for participants of the course. Wei needs help of other teachers, and of Training Hub.
- [Slides for the course updates](https://docs.google.com/presentation/d/1M69J8ErIeo5qcADYYDrDs0Pl4KvYh9I41IgCDMiZUpU/edit?usp=sharing)

### Clemens course
Together with Valentina (GU) and Luisa (DDLS). Nothing new yet. Connected to NDPIA.

### Omics and datadriven precision health
Wen Zhong's course, proposal for 2025, LiU. Applications in precision medicine, aim to open on national level. Also lectures from industry. 4.5 hp.

### AI in antibiotic
Laura Carroll, co-organized with Johan

### Any other courses?

- Even courses you run at the universities
- Let us know so we can announce national courses
- Pilot courses to add to our Materials section on the training portal
- What is the best way for you to report what courses you are developing?
- Reporting system?
- At the annual meeting, take some time for fellows to fill in relevant information
- Provide guides for course recording
- [Guides](https://training.scilifelab.se/our_resources/guides)

Best way would be for a dedicated person at TH that helps DDLS fellows in making their training accessible.

## Updates from RSMG

## Any other business?

- Get compute resources for DDLS training (mostly GPUs, jupyter hub, SLURM)

#### Upcoming NBIS courses

| Courses spring 2024 | Date |
| ------------------------------------------ | ----------- |
| RNAseq data analysis | 11-15 March |
| Data Visualization in R | 16-18 April |
| Introduction to Biostatistics and ML | 22-26 April |
| Tools for reproducible research | 22-26 April |
| Programming Formalisms? | 22-26 April |
| Introduction to Data Management Practices | 23-25 April |
| Snakemake bring-your-own-code workshop | 27-29 May |
| Workshop Neural Nets and Deep Learning | 20-24 May |
| RaukR | 10-20 June | |

| Potential courses fall 2024 |
| --------------------------------------------- |
| Introduction to bioinformatics using NGS data |
| MLBiostats 2 |
| **Omics integration** |
| Population Genomics |
| Introduction to Data Management Practices |
| **Biomarker Discovery** |

Course catalouge: https://uppsala.instructure.com/courses/79097

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### Thank you for joining and see you next time!