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Portable BioTools
This setup works on any computer with installed Singularity/Apptainer.
Avalable on
/sw/apps/pm-tools/latest/rackham/singularity/BioTools/bin
/pdc/software/uppmax_legacy/pm-tools/singularity/BioTools/bin
Tools in the container
!!! WARNING !!!
2023.11.01: On Dardel, the default configuration does not mount user's project folder by default. To do this transparently add
export SINGULARITY_BIND=/cfs/klemming/projects
to your~/.bashrc
or make sure to run the line before using singularity.nextflow
,nf-core
, andsnakemake
do not need this "fix".Check
Setup on new location
BioTools-ubuntu.sif
container to your project folder.bin
.Test / running
Setup details
https://github.com/pmitev/UPPMAX-Singularity/tree/main/BioTools
Contacts:
tags:
UPPMAX