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Hitchhikers Guide to Biomedical Scientific Computing

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  • Emoji
  • Name
  • UArizona Affiliation
  • How you interact with data
  • tags

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Heidi Steiner, Data Science Educator @ Data Science Institute, human genome and gut microbiome research R
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Sarah Yates, Sr. Data Specialist @ Petersen HIV Clinics, patient population metrics and quality improvement programs stata
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Juvie Farol, PhD Student @ CoM-T, pharmacogenomics
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Nicole Jimenez, Post-doctoral researcher @ CoM-P, vaginal microbiome and gynecological phenotypes microbiome
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Brandon Jernigan, Biobank Research Specialist @ UAHS, Biorepository quality and IT EHR communications
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Michael Plank, Post-doctoral Researcher @ Department of Molecular and Cellular Biology, large scale network omics R perl systems biology
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Angie, Post-doctoral Researcher @ Department of Molecular Cellular Medicine
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Marjan Aghajani, Post-doctoral Researcher, @ CoM-P, Translational Cardiovascular Research proteomics metabolomics
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Shashank Yadav, 1st year PhD student, Department of Biomedical Engineering dna protein biomedical imaging

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Meeting Notes

June 16, 2022
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June 23, 2022
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June 30, 2022
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July 7, 2022
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July 14, 2022
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  • Meeting cancelled

July 21, 2022
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  • Heidi, Brandon, Michael, Angie
  • Map/Pool of resources
    • HPC and where to get training
    • Collaborations, who does what
    • edge, linkedin learnings trainings
  • Fantastic CI and where to find them
  • Brandon's Notion
  • Data Methods
  • Slack Channel?

July 28, 2022
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  • Meeting cancelled

August 4, 2022
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  • Heidi, Brandon, Michael, Marjan
  • Recap of rstudio::conf(2022) and Pharmaverse

August 11, 2022
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August 18, 2022
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  • Heidi, Brandon, Sarah, Shashank

  • consistent rotating schedule

    • invited speakers series
      • I invite outside people one week per month to talk about their work
      • vote month before
    • Team Connection working group
      • creates or pushed forward the creation of resource to connect people
    • bring your own issues
      • sign up on a calendar?
    • book club
      • choose a data science book and walk through it together on a once/mo basis
  • Upcoming learning events

    • r/medicine
    • Sarah @ ryan white conference
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