or
or
By clicking below, you agree to our terms of service.
New to HackMD? Sign up
Syntax | Example | Reference | |
---|---|---|---|
# Header | Header | 基本排版 | |
- Unordered List |
|
||
1. Ordered List |
|
||
- [ ] Todo List |
|
||
> Blockquote | Blockquote |
||
**Bold font** | Bold font | ||
*Italics font* | Italics font | ||
~~Strikethrough~~ | |||
19^th^ | 19th | ||
H~2~O | H2O | ||
++Inserted text++ | Inserted text | ||
==Marked text== | Marked text | ||
[link text](https:// "title") | Link | ||
 | Image | ||
`Code` | Code |
在筆記中貼入程式碼 | |
```javascript var i = 0; ``` |
|
||
:smile: | ![]() |
Emoji list | |
{%youtube youtube_id %} | Externals | ||
$L^aT_eX$ | LaTeX | ||
:::info This is a alert area. ::: |
This is a alert area. |
On a scale of 0-10, how likely is it that you would recommend HackMD to your friends, family or business associates?
Please give us some advice and help us improve HackMD.
Do you want to remove this version name and description?
Syncing
xxxxxxxxxx
arcasHLA at UPPMAX
https://github.com/RabadanLab/arcasHLA
Singularity container
Recipe from the original dockerfile
Singularity definition file (click on the line to unfold)
To build the container, you need computer which has Singularity installed and root access.
Or arrange a way to obtain the build container file.
If you have the container, you can always check how it was build by running.
Running the tool - test
https://github.com/RabadanLab/arcasHLA#test
pip install
etc.git clone https://github.com/RabadanLab/arcasHLA.git
. For convenience, this is done in the container and you can instead copy it to you project folder as follows:Fetch IMGT/HLA database version 3.24.0:
Extract reads
Genotyping (no partial alleles)
And so on…
Remember, on Bianca you do not have Internet access, so the steps that fetch or update data need to be done on machine with Singularity and Internet access - no root required.
Contacts:
tags:
UPPMAX
,SNIC