How to use ORCHIDEE in off-line mode with IPSL LibIGCM (2023/02/13)(Yi-Ying Chen, RCEC)

資源

User Guide to ORCHIDEE
FERRET TIPS

MobaXterm Settings

OpenGL acceleration: Hardware

Add Session for SSH connection to Taiwainia3 (203.145.216.51)

Testing the plot

$R

>data(volcano)
>image(volcano)
>q()

Login server, computational server

• NCHC server Taiwania3
  Domain name: twnia3.nchc.org.tw
  Account: xxxx
  Passwd: xxxx
  MOTP: xxxx (可用Google Authenticator)
  
  
• Slurm 指令

Environment setting

1. In the server Taiwania3, there are several compilers that can be loaded by using “module load module_name“
   Please type module list to show the current loaded modules
   

   

2. initial bash setting via the ~/.bashrc file
   

   

Copy the ORCHIDEE to your home directory

$mkdir  MODEL_IPSL
$cp /home/u9197633/MODEL_IPSL/ORC_4262_copy ~/MODEL_IPSL/ -rf
$du -h --max-depth=1

• change the foler name from “ORC_4262_copy” to “ORC_4262”
  $ mv ORC_4262_copy ORC_4262 (mv可改檔名)

Step by Step configuration, compile the code, and submit jobs

1. Copy ORCHIDEE
   $cp /home/u9197633/MODEL_IPSL/ORC_4262_copy/ /home/u1234567/MODEL_IPSL/. -rf
2. Modify the local path in libIGCM library

• /home/u1234567/MODEL_IPSL/ORC_4262/libIGCM/libIGCM_sys
  $vim libIGCM_sys_default.ksh
export PATH=${PATH}:/chia_cluster/home/${LOGIN}/ORC_4262/bin/

3. Create make files in TWNIA3 server

• /chia_cluster/home/ User/ORC_4262/util
  $ ./ins_make -t t3

4. Compile the code

cd /home/u1234567/MODEL_IPSL/ORC_4262/config/ORCHIDEE_OL
$ gmake clean
$ gmake without_xios

5. Submit a job

$ vim clean.sh  #modify the job path 
$ sbatch Job_test.run.tw
$ squeue | grep "u1234567"

查看資料輸出結果

輸出路徑(Carbon)

$ cd /work/u2936446/IGCM_OUT/OL2/TEST/secsto/test.run.tw/SBG/Output/MO/
$ ls
ferret.jnl      ferret.jnl.~3~                                       test.run.tw_20190101_20191231_1M_stomate_history.nc  test.run.tw_20220101_20221231_1M_stomate_history.nc
ferret.jnl.~1~  ferret.jnl.~4~                                       test.run.tw_20200101_20201231_1M_stomate_history.nc  test.run.tw_20230101_20231231_1M_stomate_history.nc
ferret.jnl.~2~  test.run.tw_20180101_20181231_1M_stomate_history.nc  test.run.tw_20210101_20211231_1M_stomate_history.nc

Ferret繪圖

進入ferret

$ ferret

use {data}

show data

畫圖

shade HEIGHT[K=2, L=1]

存檔

frame /files=test1.gif

離開

q

呈現

• 取回local端後可用如FastStone轉檔為jpg格式