Taiwania 3 tips (2024)

link to other Markdown

• BIG SEVER tips (about basic Linux)
• How to use ORCHIDEE in off-line mode with IPSL LibIGCM (2023/02/13)(Yi-Ying Chen, RCEC)
• How to use ORCHIDEE with libIGCM? (2023/02/20)(Yi-Ying Chen, RCEC)

TWCC-III

• Taiwania 3 manual (Chinese version)
• IDExpert for 2FA
• host:t3-c3.nchc.org.tw / port:22

.bashrc settings (load module when login)

module load old-module
module load rcec/ufs-ext/bbc872c-intel19-ompi
module load libs/gdal/3.4.1
module load biology/Python/3.11.0

ORCHIDEE settings

clean.sh (change job name, remove the files we don't need)

rm -rf /work/u2936446/IGCM_OUT/OL2/PROD/secsto/{Job name}

config.card (change job name/date range/output path/ restart rule…)

JobName={Job name}

DateBegin=1993-01-01
DateEnd=2017-12-31

ARCHIVE=/work/{t3 account}/
[Restarts] OverRule=n

/PARAM/run.def (change region/PFT parameter)

#small region (Taipei)
LIMIT_WEST=121.00
LIMIT_EAST=122.00
LIMIT_SOUTH=24.5
LIMIT_NORTH=25.5

/COMP/orchidee_ol.card (set BoundaryFiles)

#2km
[BoundaryFiles]
List=(/work/u2936446/orchideeshare/TCCIP_compress/TCCIP_${year}.nc, forcing_file.nc)

/COMP/sechiba.card (set BoundaryFiles)

#PFT maps
[BoundaryFiles]
List=(/work/u9197633/orchideeshare/MAPS/PFT_map_tw_5km_2017.nc, PFTmap.nc)

summit a job

1. rm Job file
2. rm run.card
3. ./clean.sh
4. check your Job file settings
5. sbatch Job file (start run)

Ferret Installation in Taiwania 3

module load miniconda3/24.1.2

• create env & PyFerret (first time)
  conda create -n FERRET -c conda-forge pyferret ferret_datasets --yes(注意ferret或numpy版本可能造成安裝失敗)
• To start using PyFerret
  conda activate FERRET
ferret
• leave this environment
  conda deactivate

Ferret tips

• use data
  use {filename}
• show data
  sh da
• Plot
  shade {var}[i=?, j=?, k=?]/plot {var}[i=?, j=?, k=?]
  e.g.
  plot LAI[i=@ave, j=@ave, k=24]
• save
  frame /files=test1.gif