---
title: 'Downloading VGP genomes using awscli'
disqus: hackmd
---

Downloading VGP genomes using awscli
===
By Tanya Lama

## Table of Contents

[TOC]

## Install
1. install or module load anaconda and awscli/1.16.144
I have installed awscli on Unity following the instructions here: https://docs.aws.amazon.com/cli/latest/userguide/getting-started-install.html

module load awscli-v2/2.15.53

2. navigate to the mSorAra bucket. This includes the mito assembly, curated genome assemblies, raw data (genomic_data) and transcriptomic data
/home/tlama_umass_edu/.local/bin/aws s3 --no-sign-request ls s3://genomeark/species/Sorex_araneus/mSorAra1/assembly_vgp_standard_2.0/
3. Copy the uncurated assembly to your local directory.
/home/tlama_umass_edu/.local/bin/aws s3 --no-sign-request cp s3://genomeark/species/Sorex_araneus/mSorAra1/assembly_vgp_standard_2.0/mSorAra1.pri.asm.20211103.fasta.gz ./

## Appendix and FAQ

:::info
**Find this document incomplete?** Leave a comment!
:::

###### tags: `VGP`

where did myoNig go?
not here:
/work/pi_tlama_umass_edu/project_toga/genomes/hg38/trackData
/work/tlama_umass_edu/project_toga/genomes/hg38/trackData

partial here:
/work/tlama_umass_edu/project_bat1k_longevity/analyses/step3_annotation/myoNig_bill