Creating a "fresh" Git repo In the top toolbar, click File > "New Repository..." In the dialog window that pops up, you will be able to provide a lot of information on how to create a new repository in a new directory. If you choose to create a repo with name "git_demo", and choose your Desktop under Local Path, it will create new folder called "git_demo" on the Desktop that is now configured to track changes. Click the "Create Repository" button to make this all happen. Turning an existing directory into a Git repo

Introduction to Artificial Intelligence and Machine Learning Who we are OCIO Data Science Lab + The Carpentries = This workshop Carpentries Code of Conduct Even though this is not technically a Carpentries workshop, we will be following the Carpentries Code of Conduct.

# Python on Hydra ## System Python vs. Conda If you type `python --version` on Hydra, it will tell you that the "system" Python is version 2.6.6. Python 2.6 was first released in 2008, and is very out-of-date, so avoid using this version of Python to run any scripts. Whether you are writing your own Python code, or utilizing other people's Python scripts, we recommend using the Conda ecosystem to locally install your own custom Python environment. ## Locally installing miniconda and setting

# How to Run `ipyrad` on Hydra ***All of these steps should be run on one of the login node.*** ## Create an `IPython` Profile Compatible with Hydra (You only have to do this once) 1. Load the ipyrad module: ``` $ module load bioinformatics/ipyrad/0.7.29 ``` 1. Configure ipyrad to run on Hydra by running `config4hydra` ``` $ config4hydra ``` - This script creates an "sge" IPython profile: (The name *sge* is arbitrary, but it will be used throughout the rest of