Julia Fitness Landscapes Julia compatability package: https://github.com/JuliaLang/Compat.jl https://github.com/glesica/NKLandscapes.jl ^old, broken package that we're going to try to use today Installation using package manager in julia fails (NKLandscapes not found) Installation through github - fails
10/27/2020Last day of RNA seq in julia Practical Ten -use kmeans or hclust (however many clusters you want) -Distance matrix from practical 4, use MDS from Multivarate Stats on this matrix -Use same matrix with clustering, color according to cluster https://juliastats.org/Clustering.jl/stable/kmeans.html add Clustering package
10/15/2020Class 10/6/20 Goal: Build counts table and analyze expression data in Julia https://biojulia.net/GenomicFeatures.jl/v0.2/io/gff3/ log on to CRC Make new working directory for today and cd into it copy files for today cp /tmp/ND_ICG_OCT_6/* . module load julia
10/8/2020The RNA-seq analysis we'll be doing today has a workflow like this: We're starting with the second to last step (Salmon), and then moving to R/Rstudio for the Differential Expression Analysis and Visualization. We definitely don't have the time in class to do everything you can do with RNASeq data, so there are some links at the bottom of this document that you can follow to tailor this workflow to your needs. To begin: Log on to the CRC Make a working directory for today and cd into it: mkdir SEP_29
10/1/2020or
By clicking below, you agree to our terms of service.
New to HackMD? Sign up