# ***Helpmee*** *(memopad for computational chemistry workflows)*
## ***Arnaud Allera***'s computational workflow tips:
[6 steps for a computational experiment workflow](https://arnall.gitlab.io/post/workflow-compute/)
[6 tips for a better LAMMPS workflow](https://arnall.gitlab.io/post/use-lammps/)
\
([source](https://arnall.gitlab.io/))
## ***Benjamin J. Lynch's*** [**Introduction to *NWChem***](https://www.msi.umn.edu/sites/default/files/IntroNWChem.pdf)
# IT4Innovations
### Useful commands:
Currently running tasks:
```
qstat -u user
```
Task (by ID) output to console:
```
check-pbs-jobs --jobid 00000.isrv1 --tailf-job-out
```
Queue for task type:
```
qstat -a |grep qexp
```
Cancel task:
```
qdel task.id
```
Project resources:
```
it4ifree
```
### Useful links:
[Resource Allocation Policy](https://docs.it4i.cz/general/resources-allocation-policy/)
[Job Submission and Execution](https://docs.it4i.cz/general/job-submission-and-execution/)
[Barbora Storage](https://docs.it4i.cz/barbora/storage/)
### Barbora
[Barbora info](https://www.it4i.cz/infrastruktura/barbora)
[Barbora Hardware Overview](https://docs.it4i.cz/barbora/hardware-overview/)
[Barbora dashboard](https://extranet.it4i.cz/dash/barbora)
# UPJŠ PC
### Useful commands:
Add task:
```
sbatch -N1 -n16 nwchem-start-mpi task.nw 16
```
Check queue:
```
squeue
```
Cancel task:
```
scancel
```
<!-- -------------------------------------------------------------------------------------------- -->
<style>
html, body, .ui-content {
background-color: #333;
color: #ddd;
}
.markdown-body h1,
.markdown-body h2,
.markdown-body h3,
.markdown-body h4,
.markdown-body h5,
.markdown-body h6 {
color: #ddd;
}
.markdown-body h1,
.markdown-body h2 {
border-bottom-color: #ffffff69;
}
.markdown-body h1 .octicon-link,
.markdown-body h2 .octicon-link,
.markdown-body h3 .octicon-link,
.markdown-body h4 .octicon-link,
.markdown-body h5 .octicon-link,
.markdown-body h6 .octicon-link {
color: #fff;
}
.markdown-body img {
background-color: transparent;
}
.ui-toc-dropdown .nav>.active:focus>a, .ui-toc-dropdown .nav>.active:hover>a, .ui-toc-dropdown .nav>.active>a {
color: white;
border-left: 2px solid white;
}
.expand-toggle:hover,
.expand-toggle:focus,
.back-to-top:hover,
.back-to-top:focus,
.go-to-bottom:hover,
.go-to-bottom:focus {
color: white;
}
.ui-toc-dropdown {
background-color: #333;
}
.ui-toc-label.btn {
background-color: #191919;
color: white;
}
.ui-toc-dropdown .nav>li>a:focus,
.ui-toc-dropdown .nav>li>a:hover {
color: white;
border-left: 1px solid white;
}
.markdown-body blockquote {
color: #bcbcbc;
}
.markdown-body table tr {
background-color: #5f5f5f;
}
.markdown-body table tr:nth-child(2n) {
background-color: #4f4f4f;
}
.markdown-body code,
.markdown-body tt {
color: #eee;
background-color: rgba(230, 230, 230, 0.36);
}
a,
.open-files-container li.selected a {
color: #5EB7E0;
}
</style>