# ***Helpmee*** *(memopad for computational chemistry workflows)* ## ***Arnaud Allera***'s computational workflow tips: [6 steps for a computational experiment workflow](https://arnall.gitlab.io/post/workflow-compute/) [6 tips for a better LAMMPS workflow](https://arnall.gitlab.io/post/use-lammps/) \ ([source](https://arnall.gitlab.io/)) ## ***Benjamin J. Lynch's*** [**Introduction to *NWChem***](https://www.msi.umn.edu/sites/default/files/IntroNWChem.pdf) # IT4Innovations ### Useful commands: Currently running tasks: ``` qstat -u user ``` Task (by ID) output to console: ``` check-pbs-jobs --jobid 00000.isrv1 --tailf-job-out ``` Queue for task type: ``` qstat -a |grep qexp ``` Cancel task: ``` qdel task.id ``` Project resources: ``` it4ifree ``` ### Useful links: [Resource Allocation Policy](https://docs.it4i.cz/general/resources-allocation-policy/) [Job Submission and Execution](https://docs.it4i.cz/general/job-submission-and-execution/) [Barbora Storage](https://docs.it4i.cz/barbora/storage/) ### Barbora [Barbora info](https://www.it4i.cz/infrastruktura/barbora) [Barbora Hardware Overview](https://docs.it4i.cz/barbora/hardware-overview/) [Barbora dashboard](https://extranet.it4i.cz/dash/barbora) # UPJŠ PC ### Useful commands: Add task: ``` sbatch -N1 -n16 nwchem-start-mpi task.nw 16 ``` Check queue: ``` squeue ``` Cancel task: ``` scancel ``` <!-- -------------------------------------------------------------------------------------------- --> <style> html, body, .ui-content { background-color: #333; color: #ddd; } .markdown-body h1, .markdown-body h2, .markdown-body h3, .markdown-body h4, .markdown-body h5, .markdown-body h6 { color: #ddd; } .markdown-body h1, .markdown-body h2 { border-bottom-color: #ffffff69; } .markdown-body h1 .octicon-link, .markdown-body h2 .octicon-link, .markdown-body h3 .octicon-link, .markdown-body h4 .octicon-link, .markdown-body h5 .octicon-link, .markdown-body h6 .octicon-link { color: #fff; } .markdown-body img { background-color: transparent; } .ui-toc-dropdown .nav>.active:focus>a, .ui-toc-dropdown .nav>.active:hover>a, .ui-toc-dropdown .nav>.active>a { color: white; border-left: 2px solid white; } .expand-toggle:hover, .expand-toggle:focus, .back-to-top:hover, .back-to-top:focus, .go-to-bottom:hover, .go-to-bottom:focus { color: white; } .ui-toc-dropdown { background-color: #333; } .ui-toc-label.btn { background-color: #191919; color: white; } .ui-toc-dropdown .nav>li>a:focus, .ui-toc-dropdown .nav>li>a:hover { color: white; border-left: 1px solid white; } .markdown-body blockquote { color: #bcbcbc; } .markdown-body table tr { background-color: #5f5f5f; } .markdown-body table tr:nth-child(2n) { background-color: #4f4f4f; } .markdown-body code, .markdown-body tt { color: #eee; background-color: rgba(230, 230, 230, 0.36); } a, .open-files-container li.selected a { color: #5EB7E0; } </style>