owned this note   changed 3 years ago  
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🚀 nf-core/tools Documentation 🚀

16th-18th March 2022

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@nf-core /
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@nf-core

nf-core/tools Team

Team Members

  • Matthias H
  • Phil
  • Pauline
  • Rike
  • Edmund
  • Matthias Z

Reorganize Docs

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Website navigation

  • Developer -> Contributing

  • Day 2: working on sidebar nav

  • Day 3: We have a sidebar (needs more styling ✨)

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Reorganise Tools Docs

  • Split readme into individual files

Tools Sphinx docs

  • Autogenerates docs about lint tests, API
  • Versioned and created, but not really linked

Tools Sphinx docs

  • DONE: Review / merge: Convert Sphinx prose RST to Markdown (not the docstrings
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    )     (#1245)
  • DONE: Review / merge: Add docs for module lint tests (#1250)

Tools Sphinx docs

  • TODO: Rewrite with MkDocStrings to have full markdown support??
  • TODO: Integrate styling with website

Module lint test docs

Code linting with Prettier

Previously: markdownlint and yamllint

Problems with the last tools release.

Been annoying for a while

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Markdownlint and Yamllint now gone

  • MERGED nf-core/tools (@ewels)
  • MERGED Pipeline template (@ewels)
  • READY Website (@Emiller88)
  • MERGED nf-core/modules (@Emiller88)
  • nf-core/configs (@Emiller88)

Prettier now everywhere

  • Applied to pipeline and website code
  • CI checks to make sure code validates
  • Soon: A bot to respond to PR comments and commit Prettier fixes automatically???

Tools release today!??!

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nf-core/testpipeline

  • Syncing nf-core/testpipeline with latest tool changes on dev to test Prettier
  • Prettier & editorsconfig don't play nice

GitPod docker images

  • Tried to fix the docker image build, failed
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