BioImage.IO Meeting Minutes
===
## May 14th 2025

:::info
**Time:** 4:00PM CET (your [timezone](https://arewemeetingyet.com/Stockholm/2022-07-13/16:00/w/BioImage.IO%20Weekly%20Meeting#eyJ1cmwiOiJodHRwczovL2t0aC1zZS56b29tLnVzL2ovNjU3NzcxNTIzMzEifQ==))
**Where:** [Zoom Channel](
https://kth-se.zoom.us/j/65777152331)
**Meeting Minutes:** [GitHub Issue](https://github.com/bioimage-io/bioimage.io/issues/28)
:::

### Attendees

| Name | Affiliation | Username (GitHub) |
| ----------- | ---------------- | --------------------- |
| Caterina Fuster-Barceló | UC3M | @cfusterbarcelo |
| Mariana G Ferreira | IGC | @mariana-gferreira |
|Fynn Beuttenmüller | EMBL | @FynnBe |
| Anna | EMBL | @akreshuk |
| Vera Galinova | HT | @veegalinova|
| Beatriz Serrano-Solano | Euro-BioImaging | @beatrizserrano |
| Mehdi Seifi | HT | @mese79|
| Esti | IGC | @esgomezm |
Teresa Zulueta-Coarasa|EMBL-EBI|@tzulueta

## Agenda
- Please, make sure to add your names on the attendees list!!!!!!!!!!!!!!

- Information for the Helsinki event demos and presentations:
- [AI4Life agenda in the webpage](https://ai4life.eurobioimaging.eu/event/ai4life-community-event/)

- Workshops:
- Workshop 1: AI4Life for scientists
- Session 1: Introduction to the BioImage Model Zoo: AI tools for image analysis in the life sciences (Anna, 1h)
- BMZ
- BioImage.IO Chatbot
- Session 2: AI4Life community spotlight: Connecting users with community partners (Arrate chairing, 1h)
- BiaPy
- SpotMAX
- QuPath
- deepIcy
- Session 3: Getting your data AI-ready at the BioImage Archive (Teresa, 45min)
- BioImage Archive
- Workshop 2: AI4Life for AI scientists, software developers and image analysts
- Session 1: Creating, Uploading, Deploying and Containerising BioImage Model Zoo Models (Esti & Fynn, 1h)
- BMZ and Python
- DL4MicEverywhere
- Session 2: Bring BioEngine In-House: Self-Hosted AI Models for Bioimage Analysis (Wei, 1h)
- BioEngine
- Session 3: Present and future of data and AI model standards (Matthew, Anna & Florian 45min)
- BioImage Archive
- RDA Interest Group FAIR4ML
- Session 4: So what’s this all good for? A story about the potential of shared and FAIR resources (Florian, 30min)

- Anna and Florian cannot join on Wednesday. An alternative meeting will be hold also on Friday at 13:00h at least on Anna's side. People's invited to join on zoom.

----
### Next Meeting(s)
- WP2-Session 1: Creating, Uploading, Deploying and Containerising BioImage Model Zoo Models (Esti & Fynn, 1h)
- Have the notebooks prepared and everything.
- Plan:
- Loading and using a BMZ-model (merge the following notebooks and write instructions in a github repository in the bioimageio community) (Esti)
- https://github.com/bioimage-io/spec-bioimage-io/blob/main/example/load_model_and_create_your_own.ipynb
- https://github.com/bioimage-io/core-bioimage-io-python/blob/main/example/model_usage.ipynb
- Creating a BMZ-model from the GUI (e.g., fill the missing text with the row affable shark model + test numpy images as an example) (Thomas & Fynn)
- Contianerise Affable-shark with a loading&use notebook (live demo Esti)

- WP2-Session 2: Session 2: Bring BioEngine In-House: Self-Hosted AI Models for Bioimage Analysis (Wei, 1h)
- AI4Life success story talks, tentative slides