BioImage.IO Meeting Minutes

May 21th 2025

Time: 4:00PM CET (your timezone)
Where: Zoom Channel
Meeting Minutes: GitHub Issue

Please, make sure to add your names on the attendees list!!!
WP2-Session 1: Creating, Uploading, Deploying and Containerising BioImage Model Zoo Models (Esti & Fynn, 1h)
- Have the notebooks prepared and everything.
- Plan:
  - Loading and using a BMZ-model (merge the following notebooks and write instructions in a github repository in the bioimageio community) (Esti)
    - https://github.com/bioimage-io/spec-bioimage-io/blob/main/example/load_model_and_create_your_own.ipynb
    - https://github.com/bioimage-io/core-bioimage-io-python/blob/main/example/model_usage.ipynb
  - Creating a BMZ-model from the GUI (e.g., fill the missing text with the row affable shark model + test numpy images as an example) (Thomas & Fynn)
  - Contianerise Affable-shark with a loading&use notebook (live demo Esti)
  - Notebook here
WP2-Session 2: Session 2: Bring BioEngine In-House: Self-Hosted AI Models for Bioimage Analysis (Nils and Wei, 1h)
AI4Life success story talks, tentative slides