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Hackathon March 2021
Framework
The wheels of nf-core keep turning thanks to a body of code that we often loosely refer to as "The Framework". This is a bit of a catch-all term that covers anything that isn't a pipeline.
The main projects are the
nf-core/tools
helper package and the website, though some lines are a little blurred between different repositories (eg. automation tools in pipelines propagated from the helper tools template).Group members
nf-core/tools
v1.13.2
patch fix release milestone- The image file may be corrupted
- The server hosting the image is unavailable
- The image path is incorrect
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Learn More →DSL2 Modules
Website
PEP Pipeline Schema
Had a nice discussion about how we could potentially go forward with this
[Nathan] Day 2: Wrote a new package to convert a PEP into customizable outputs for downstream consumption, like a project-level YAML format: https://github.com/pepkit/pepconvert
Refgenie integration
http
ors3
, getting us a step closer to using refgenie to replace the aws iGenomes files- The image file may be corrupted
- The server hosting the image is unavailable
- The image path is incorrect
- The image format is not supported
Learn More →