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# System prepended metadata

title: Notes

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# Notes
### Introduction to Bioinformatics using NGS data

#### Thoughts for coming workshops:
* Do we want to teach ssh keys?
* 


#### GATK
A tutorial about hard filtering of SNPs:
https://gatk.broadinstitute.org/hc/en-us/articles/360035890471-Hard-filtering-germline-short-variants

Another idea for next time: Can we use VQSR in the lab? It is not recommended for such a small dataset as ours, but will it still "run"? If so, perhaps it is more useful to teach that method since that one is more often to be used in real life. 