---
# System prepended metadata

title: A book about RNAseq Analysis
tags: [rna-seq, book]

---

A book about RNAseq Analysis
===

###### tags: `book` `rna-seq`

- [All books](/d0m0ANBRQfiKia9XHtNXqw)

Instructions/notes
---
- [cellXgene](/WRYDtbRqSiuzq9SSpTapAw)
- [1 Finding datasets *April-21*](/Icsu5ckDTmqnBcTJiVNtoQ)
- [2 Downloading datasets *April-21*](/t8pBa81ZQceQLjKNVxqdOA)
- [3 GEO-data -> h5ad *April-21*](/TMseXreUQIesSHA2pFLnYA)

- [Load data into Omics-playground](/CQt7PeQGSY-tH3H0I5efJA)


Old chapters to be removed.
===

Packages
---
- [Loom](/-szAH65zTWahA4UwDoUMSg)
- [Combine data Notes](/1K4Qxba2SNqy6Mnf-1x8TA)




Analysis
---
- [Cellular States](/ZN7OVQoRSpar5aWYGAo5MQ)
- [Frame](/ZOWUr412TZu0MZV7EWBa2g)
- [Pathways](/CqpX0q3KSE6MDmM8YQqnjw)
- [Pathway enrichment analysis](/N-AdZZSHQ12WnP0LQ3S_LA)
- [Deep Learning for sRNA-seq Analysis](/UXpMWkl9RNWNasKe90gCxg)
- [Breakdown of Zeisel . . . Linnarsson 2018 analysis](/uyCcOue5QnCm9ucqqPVh7A)
- [Manno 2020 paper - Developmental mouse atlas](/HCQ5O6JQS2eVabrg7aD0aQ)
- [Romanov 2020 Paper - Molecular design of hypothalamus development](/RjKiyOYSSsS3012qfwN_kw)

Resources
---
- [RNAseq online libraries](/BR8S5KnsQFCWYgOoY9XyIg)



Appendix
---
- [Definitions](/HVW1y2HrRMGxJ1c8ZUd7Gg)

- [Synthetic biology etc](/sfkI4RI4Qx6YUXEd0snvYQ)
- [Paralell computing](/KbWRAYdJQFekVx_ZcJ1GgQ)

:::success
# __Change_log__

>  __2020-XX-XX__ First edition. 
>  [name=MrDr.Staffan]
:::



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###### tags: `book` `SOP` `RNAscope`
