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### 5. Genotyping Polyploids from Messy Sequencing Data
**Paper:** Gerard, D., Ferrão, L. F. V., Garcia, A. A. F., & Stephens, M. (2018). Genotyping polyploids from messy sequencing data. Genetics, 210(3), 789-807.


**Why should we attempt to reproduce this paper?** Full reproducible empirical analysis available in Github. They created an R package called updog that implement the method. It should be fairly simple (not many commands). Problem might be dependecies of the packages though...


**Paper URL:** https://www.genetics.org/content/210/3/789 
**Data URL:** ftp://ftp.kazusa.or.jp/pub/sweetpotato/GeneticMap/ 
**Code URL:** https://github.com/dcgerard/reproduce_genotyping
 
**Tags:** `R`, `genotyping`