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# System prepended metadata

title: Containers & workflow pipelines - Training materials hackathon - Day 2

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# Containers & workflow pipelines - Training materials hackathon - Day 2

Logistics
- [Zoom URL](https://zoom.us/j/97885672891?pwd=UTJ1bWtLbnQ0dEZGR0RTQkNSMjBndz09)
- [Lesson repository](https://github.com/vibbits/containers-workflow-hackathon)
- [This overview](https://hackmd.io/U7obAY5DTIyT85scmRMwlQ)

Schedule
- 09:15 CET (zoom session starts)
- 09:30 CET 2020-11-02: Start & recap of day 1
- 09:45: Confirm structure of materials & workflow 
- 10:00: Breakout sessions: confirm LO & exercises development
- 12:15: Main room: Report out & discussion
- 12:30: [Lunch] Break (individual)
- 13:30: Breakout sessions: exercises development
- (15:30: Report in case necessary)
- 16:30: Main room: Report out, wrap-up time and road ahead
- 17:00: End of hackathon

Who's here:
- Tuur Muyldermans | ELIXIR Belgium & VIB Bioinformatics Core | github: @tmuylder | twitter: / 
-
- Sarah Bonnin | CRG Barcelona | github: @sarahbonnin | twitter: @SarahFBonnin
- Geert van Geest | SIB Swiss Institute of Bioinformatics | github: @geertvangeest
- Maxime Garcia | Karolinska Institutet - Scilifelab | github: [@maxulysse](https://github.com/maxulysse) | twitter: [@gau](https://twitter.com/gau)
- Renuka Kudva | NGI- SciLifeLab | github: @renbot-bio 
- Toni Hermoso Pulido | CRG Barcelona | github: @toniher | twitter: @toniher
- Mateusz Kuzak | the Netherlands eScience Center | github: [mkuzak](https://github.com/mkuzak) twitter: [@matkuzak](https://twitter.com/matkuzak)
-   

## Previously on: C&W training materials hackathon

| Time | Scope |
|------|-------|
|  Day #1 of Hackathon  | - Collected existing materials & set the scope <br/> - Defined learners’ profiles (i.e. target audience) <br/> - Specified Learning objectives and, <br/> - Specified Learning outcomes  |
| Before day #2 of Hackathon | - Reformat / Restructure all notes <br/> - Create a skeleton structure of the material (pending approval) |



## Structure for each training materials

Two personas: user vs developer. For each persona: 
- Learner's profiles:
    - Who are they?
    - What challenges are they facing? 
    - How will the lesson/workshop help them?
- Learner's objectives
    - Prerequisites for the course/tutorial
    - Define exercises with learning outcomes (measurable)*

- Training materials: outline of exercises


## Plan for today

Focus on developing modular training materials exercises which together make up for a nice story:
- Exercise
    - Answering to LO # 
    - Before exercise have done:
    - Define task
    - Write solution


- Reference: https://github.com/fpsom/elixir-ml-biostats-hackathon


## Goal for today

- Confirm structure and flow of the content
- Confirm learning outcomes per group 
- Prepare the first set of hands-on exercises that target specific learning outcomes (one or more)
- Glue the exercises together
- Identify potential timeline for final release

## Who was working on which project

| Training materials project | Persona |                                  Contributors                                  |
|:--------------------------:|:-------:|:------------------------------------------------------------------------------:|
|         Containers         |  1 & 2  | Alexander Botzki, Marko Vidak, Mateusz Kuzak, Geert van Geest, Pedro Fernandes |
|          Workflows         |    1    |        Sarah Bonnin, Toni Hermoso Pulido, Renuka Kudva, Tuur Muyldermans       |
|          Workflows         |    2    |               Luca Cozzuto, Jose Espinosa-Carrasco, Maxime Garcia              |

## Way of working
Contribution documents are online available at hackmd.io and can updates are automatically pushed to the markdown documents in the materials directory.
- Containers training materials on [hackmd](https://hackmd.io/krqYgepjTN-f0F_9hptJNA)
- Workflow pipelines training materials on [hackmd](https://hackmd.io/VSl5XYN9SYSYTIA6HQMeMg)


## After lunch

- General structure of carpentries: https://datacarpentry.org/shell-genomics/01-introduction/index.html
- Admonitions if applicable/possible: https://squidfunk.github.io/mkdocs-material/reference/admonitions/


## Feedback
https://elixir.mf.uni-lj.si/course/view.php?id=63