---
# System prepended metadata

title: HPC SS24 Notes

---

**HPC SS24 Notes**

Alex Keller chiras 
Jakob Humbeck JJhumbi ra67vaw
Moritz von Strempel moritzvstr ra67jul
Felix Fohrmann felixfohrmann ra95rey
Max Wölfle M4xwo ra76waj
Lilian Käser lil0104 ra79rat
Anja Gabe AnjaGabe ra24tan
Elettra Fromm elettra1003 ra28qaf
              MajaMueller ra46bem
Daniela Alvarado danielaAlvV  ra67tek
Julian Müller Juliannmueller ra54xuh

https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCF_000442985.1/download?include_annotation_type=GENOME_FASTA&include_annotation_type=GENOME_GFF&include_annotation_type=RNA_FASTA&include_annotation_type=CDS_FASTA&include_annotation_type=PROT_FASTA&include_annotation_type=SEQUENCE_REPORT&hydrated=FULLY_HYDRATED

```
tax=$(docker run --rm -it ncbi/edirect  /bin/bash -c  "efetch -db taxonomy -id $ID2 -format xml | xtract -pattern Taxon -block '*/Taxon' -tab '\n'  -element Id,Rank,TaxId,ScientificName" | grep "phylum" | cut -f 3)

```