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Practical Deep Learning - Schedule

Contributions:

May 6 - 8, 09:00 - 12:00 (CET), 2025

General information

Links for the workshop:

Links for ENCCS

Links for NCC Romania

Links for NTNU


Organizers and Instructors

  • Andreea Dinu (AD), ICI Bucharest/NCC Romania
  • Ashwin Mohanan (AM), RISE/ENCCS
  • Yonglei Wang (YW), LiU/ENCCS
  • Sebastian Muraru (SM), ICI Bucharest/NCC Romania
  • Elena-Anca Paraschiv (EP), ICI Bucharest/NCC Romania
  • Vijeta Sharma (VS), NTNU

Ice breaking question

What's your first name, and on what project you are working with Deep Learning and which package(s) are you using for Deep Learning?

  • M from Germany - just getting started with ML and deeplearning. Working on theoretical quantum many body physics.
  • SH from Stockholm. I work in Agrigenomics and am using Deep Learning for image analysis.
  • S from Sweden. Working in Pharmacogenomics. No experience in DL but interested for future projects.
  • V from Germany. I want to get a better understanding of ML and deepLearning. Working on theoretical quantum many body physics
  • V from Lund, Sweden. Working on phage genomics and protein structures. Vastly experienced in ML but hoping to learn more about Deep learning as this is an approach I would use for my project in the next months.
  • A, Sweden. Computer Vision + ML package for digitizing tables containing handwritten-text.
  • M, Recognition of plant diseases with Pytorch.
  • T, Prediction of biophysical properties from protein dynamics
  • V from Poland, working on a university project and thought deep learning on supercomputers might help stand out. Just starting out with HPC in general.
  • I from Sweden, currently don't use deep learning but think it's good to be in the know. Work in quantum computing.
  • R, Sweden. Learn about machine and deep learning for materials research.
  • D, ML interatomic potentials
  • A, from Saudi Arabia, working on Density Functional Theory for my master research
  • S, Sweden. Working with Pattern Detection and Analysis of Emmision data from IC engines
  • K, Sweden. Working with model based calibration for IC engines
  • G, Germany. I would like to know how to classify patterns for materials.

Schedule

(May 5) Day 0 โ€“ On-boarding to LUMI machine (10:00-12:00, CET)

(May 6) Day 1

Time Contents Instructor(s)
09:00-09:10 Welcome YW
09:10-09:50 Introduction to Deep Learning YW
09:50-10:00 Coffee Break
10:00-10:50 Classification by a neural network using Keras (I) AM
10:50-11:00 Coffee Break
11:00-11:50 Classification by a neural network using Keras (II) AM
11:50-12:00 Wrap-up

(May 7) Day 2

Time Contents Instructor(s)
09:00-09:10 Welcome and recap YW
09:10-10:00 Monitor the training process YW
10:00-10:10 Coffee Break
10:10-11:00 Advanced Layer Types AM
11:10-11:10 Coffee Break
11:10-11:50 Transfer learning & Outlook AM
11:50-12:00 Wrap-up

(May 8) Day 3

Time Contents Instructor(s)
09:00-09:10 Welcome and recap YW
09:10-10:20 Three tools (Geneformer, Boltz-1, GROMACS) to get your feet wet with computational drug development SM
10:20-10:40 Coffee Break
10:40-11:50 Applications of Deep Learning algorithms for retinal diseases diagnosis based on Optical Coherence Tomography imaging EP
11:50-12:00 Wrap-up YW

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