# BPC computational resources
# Available servers and their status (Connecting using secure shell (SSH))
> ssh [username]@evol5.mbl.edu
## For the current users-guide/handbook, type "handbook"
> manual
## For the current network status, type "status"
## For the current network news, type "news"
## For a list of your current processes on the various
servers, type "activity"
## For an account of your disk space usage, type 'usage'

## Help (Hanbook, man or info pages) & news
> man bash
> info bash

### Directories: Home directories are all located under /users, Working groups directories are all located under /groups, Workspace (intended to hold temporary data)
> cd /workspace/
## Clusterize program (jobs and status)
> clusterize
> qstat
> qstat -f
> usage
### Kill job
> qdel <job_id>
## Modules (software), load (install) module into your session
> module avail
> module load <module_name>

### Transferring files/folders in and out the server using scp program
> scp <file name> user@host:~/
> scp -r <dir> user@host:~/
#### Examples:
> scp -r /Users/sherlynette/Downloads/Metagenomics luna.jbpc-np.mbl.edu:~
> scp /Users/sherlynette/Downloads/external-genomes.txt luna.jbpc-np.mbl.edu:~/Bins_fa
> scp sperezcastro@luna:/workspace/SAMPLE-MAPPING.txt /Users/sherlynette/Downloads
### Moving files/folders in the server using
> mv /users/sperezcastro/Metagenomics/concatpear.fa /users/sperezcastro
### Restore compressed files to their original form using gunzip command
> gunzip <file_name.gz>
#### Example:
> gunzip *.fastq.gz
### Remove file/directory
> rm <file_name>
> rm -r <folder_name>
### Count files in a folder
> find /PATH/TO/FOLDER -type f | wc -l
> find /Users/sherlynette/Downloads/Lemon16S -type f | wc -l
> find -type f | wc -l