gnomAD-3-註釋欄位後半部

gnomAD-3-註釋欄位後半部 === ###### tags: `基因體/三級分析/資料庫` ###### tags: `基因體`, `SNP`, `dbSNP`, `Variant` [TOC] ## 註釋欄位 - ### 新增 INFO 欄位 (`gnomad_` 為自定義 prefix) > [點此查看前半部](https://hackmd.io/d1ehBZm6QD6uwANcVS5-NA) > [點此查看後半部](https://hackmd.io/EDoP9JdbQjya7EXDu_LDRw) | ID | Number / Type Description | |----|------------------------------| | gnomad_non_neuro_AC | A / Integer Alternate allele count for samples in the non_neuro subset | | gnomad_non_neuro_AC_afr | A / Integer Alternate allele count for samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_AC_afr_female | A / Integer Alternate allele count for female samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_AC_afr_male | A / Integer Alternate allele count for male samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_AC_amr | A / Integer Alternate allele count for samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_AC_amr_female | A / Integer Alternate allele count for female samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_AC_amr_male | A / Integer Alternate allele count for male samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_AC_asj | A / Integer Alternate allele count for samples of Ashkenazi Jewish ancestry in the non_neuro subset | | gnomad_non_neuro_AC_asj_female | A / Integer Alternate allele count for female samples of Ashkenazi Jewish ancestry in the non_neuro subset | | gnomad_non_neuro_AC_asj_male | A / Integer Alternate allele count for male samples of Ashkenazi Jewish ancestry in the non_neuro subset | | gnomad_non_neuro_AC_eas | A / Integer Alternate allele count for samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AC_eas_female | A / Integer Alternate allele count for female samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AC_eas_jpn | A / Integer Alternate allele count for samples of Japanese ancestry in the non_neuro subset | | gnomad_non_neuro_AC_eas_kor | A / Integer Alternate allele count for samples of Korean ancestry in the non_neuro subset | | gnomad_non_neuro_AC_eas_male | A / Integer Alternate allele count for male samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AC_eas_oea | A / Integer Alternate allele count for samples of Other East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AC_female | A / Integer Alternate allele count for female samples in the non_neuro subset | | gnomad_non_neuro_AC_fin | A / Integer Alternate allele count for samples of Finnish ancestry in the non_neuro subset | | gnomad_non_neuro_AC_fin_female | A / Integer Alternate allele count for female samples of Finnish ancestry in the non_neuro subset | | gnomad_non_neuro_AC_fin_male | A / Integer Alternate allele count for male samples of Finnish ancestry in the non_neuro subset | | gnomad_non_neuro_AC_male | A / Integer Alternate allele count for male samples in the non_neuro subset | | gnomad_non_neuro_AC_nfe | A / Integer Alternate allele count for samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_AC_nfe_bgr | A / Integer Alternate allele count for samples of Bulgarian (Eastern European) ancestry in the non_neuro subset | | gnomad_non_neuro_AC_nfe_est | A / Integer Alternate allele count for samples of Estonian ancestry in the non_neuro subset | | gnomad_non_neuro_AC_nfe_female | A / Integer Alternate allele count for female samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_AC_nfe_male | A / Integer Alternate allele count for male samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_AC_nfe_nwe | A / Integer Alternate allele count for samples of North-Western European ancestry in the non_neuro subset | | gnomad_non_neuro_AC_nfe_onf | A / Integer Alternate allele count for samples of Other Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_AC_nfe_seu | A / Integer Alternate allele count for samples of Southern European ancestry in the non_neuro subset | | gnomad_non_neuro_AC_nfe_swe | A / Integer Alternate allele count for samples of Swedish ancestry in the non_neuro subset | | gnomad_non_neuro_AC_oth | A / Integer Alternate allele count for samples of Other ancestry in the non_neuro subset | | gnomad_non_neuro_AC_oth_female | A / Integer Alternate allele count for female samples of Other ancestry in the non_neuro subset | | gnomad_non_neuro_AC_oth_male | A / Integer Alternate allele count for male samples of Other ancestry in the non_neuro subset | | gnomad_non_neuro_AC_popmax | A / Integer Allele count in the population with the maximum AF in the non_neuro subset | | gnomad_non_neuro_AC_raw | A / Integer Alternate allele count for samples in the non_neuro subset, before removing low-confidence genotypes | | gnomad_non_neuro_AC_sas | A / Integer Alternate allele count for samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AC_sas_female | A / Integer Alternate allele count for female samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AC_sas_male | A / Integer Alternate allele count for male samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AF | A / Float Alternate allele frequency in samples in the non_neuro subset | | gnomad_non_neuro_AF_afr | A / Float Alternate allele frequency in samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_AF_afr_female | A / Float Alternate allele frequency in female samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_AF_afr_male | A / Float Alternate allele frequency in male samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_AF_amr | A / Float Alternate allele frequency in samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_AF_amr_female | A / Float Alternate allele frequency in female samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_AF_amr_male | A / Float Alternate allele frequency in male samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_AF_asj | A / Float Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the non_neuro subset | | gnomad_non_neuro_AF_asj_female | A / Float Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the non_neuro subset | | gnomad_non_neuro_AF_asj_male | A / Float Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the non_neuro subset | | gnomad_non_neuro_AF_eas | A / Float Alternate allele frequency in samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AF_eas_female | A / Float Alternate allele frequency in female samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AF_eas_jpn | A / Float Alternate allele frequency in samples of Japanese ancestry in the non_neuro subset | | gnomad_non_neuro_AF_eas_kor | A / Float Alternate allele frequency in samples of Korean ancestry in the non_neuro subset | | gnomad_non_neuro_AF_eas_male | A / Float Alternate allele frequency in male samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AF_eas_oea | A / Float Alternate allele frequency in samples of Other East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AF_female | A / Float Alternate allele frequency in female samples in the non_neuro subset | | gnomad_non_neuro_AF_fin | A / Float Alternate allele frequency in samples of Finnish ancestry in the non_neuro subset | | gnomad_non_neuro_AF_fin_female | A / Float Alternate allele frequency in female samples of Finnish ancestry in the non_neuro subset | | gnomad_non_neuro_AF_fin_male | A / Float Alternate allele frequency in male samples of Finnish ancestry in the non_neuro subset | | gnomad_non_neuro_AF_male | A / Float Alternate allele frequency in male samples in the non_neuro subset | | gnomad_non_neuro_AF_nfe | A / Float Alternate allele frequency in samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_AF_nfe_bgr | A / Float Alternate allele frequency in samples of Bulgarian (Eastern European) ancestry in the non_neuro subset | | gnomad_non_neuro_AF_nfe_est | A / Float Alternate allele frequency in samples of Estonian ancestry in the non_neuro subset | | gnomad_non_neuro_AF_nfe_female | A / Float Alternate allele frequency in female samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_AF_nfe_male | A / Float Alternate allele frequency in male samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_AF_nfe_nwe | A / Float Alternate allele frequency in samples of North-Western European ancestry in the non_neuro subset | | gnomad_non_neuro_AF_nfe_onf | A / Float Alternate allele frequency in samples of Other Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_AF_nfe_seu | A / Float Alternate allele frequency in samples of Southern European ancestry in the non_neuro subset | | gnomad_non_neuro_AF_nfe_swe | A / Float Alternate allele frequency in samples of Swedish ancestry in the non_neuro subset | | gnomad_non_neuro_AF_oth | A / Float Alternate allele frequency in samples of Other ancestry in the non_neuro subset | | gnomad_non_neuro_AF_oth_female | A / Float Alternate allele frequency in female samples of Other ancestry in the non_neuro subset | | gnomad_non_neuro_AF_oth_male | A / Float Alternate allele frequency in male samples of Other ancestry in the non_neuro subset | | gnomad_non_neuro_AF_popmax | A / Float Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry) in the non_neuro subset | | gnomad_non_neuro_AF_raw | A / Float Alternate allele frequency in samples in the non_neuro subset, before removing low-confidence genotypes | | gnomad_non_neuro_AF_sas | A / Float Alternate allele frequency in samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AF_sas_female | A / Float Alternate allele frequency in female samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AF_sas_male | A / Float Alternate allele frequency in male samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AN | 1 / Integer Total number of alleles in samples in the non_neuro subset | | gnomad_non_neuro_AN_afr | 1 / Integer Total number of alleles in samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_AN_afr_female | 1 / Integer Total number of alleles in female samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_AN_afr_male | 1 / Integer Total number of alleles in male samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_AN_amr | 1 / Integer Total number of alleles in samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_AN_amr_female | 1 / Integer Total number of alleles in female samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_AN_amr_male | 1 / Integer Total number of alleles in male samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_AN_asj | 1 / Integer Total number of alleles in samples of Ashkenazi Jewish ancestry in the non_neuro subset | | gnomad_non_neuro_AN_asj_female | 1 / Integer Total number of alleles in female samples of Ashkenazi Jewish ancestry in the non_neuro subset | | gnomad_non_neuro_AN_asj_male | 1 / Integer Total number of alleles in male samples of Ashkenazi Jewish ancestry in the non_neuro subset | | gnomad_non_neuro_AN_eas | 1 / Integer Total number of alleles in samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AN_eas_female | 1 / Integer Total number of alleles in female samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AN_eas_jpn | 1 / Integer Total number of alleles in samples of Japanese ancestry in the non_neuro subset | | gnomad_non_neuro_AN_eas_kor | 1 / Integer Total number of alleles in samples of Korean ancestry in the non_neuro subset | | gnomad_non_neuro_AN_eas_male | 1 / Integer Total number of alleles in male samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AN_eas_oea | 1 / Integer Total number of alleles in samples of Other East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AN_female | 1 / Integer Total number of alleles in female samples in the non_neuro subset | | gnomad_non_neuro_AN_fin | 1 / Integer Total number of alleles in samples of Finnish ancestry in the non_neuro subset | | gnomad_non_neuro_AN_fin_female | 1 / Integer Total number of alleles in female samples of Finnish ancestry in the non_neuro subset | | gnomad_non_neuro_AN_fin_male | 1 / Integer Total number of alleles in male samples of Finnish ancestry in the non_neuro subset | | gnomad_non_neuro_AN_male | 1 / Integer Total number of alleles in male samples in the non_neuro subset | | gnomad_non_neuro_AN_nfe | 1 / Integer Total number of alleles in samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_AN_nfe_bgr | 1 / Integer Total number of alleles in samples of Bulgarian (Eastern European) ancestry in the non_neuro subset | | gnomad_non_neuro_AN_nfe_est | 1 / Integer Total number of alleles in samples of Estonian ancestry in the non_neuro subset | | gnomad_non_neuro_AN_nfe_female | 1 / Integer Total number of alleles in female samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_AN_nfe_male | 1 / Integer Total number of alleles in male samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_AN_nfe_nwe | 1 / Integer Total number of alleles in samples of North-Western European ancestry in the non_neuro subset | | gnomad_non_neuro_AN_nfe_onf | 1 / Integer Total number of alleles in samples of Other Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_AN_nfe_seu | 1 / Integer Total number of alleles in samples of Southern European ancestry in the non_neuro subset | | gnomad_non_neuro_AN_nfe_swe | 1 / Integer Total number of alleles in samples of Swedish ancestry in the non_neuro subset | | gnomad_non_neuro_AN_oth | 1 / Integer Total number of alleles in samples of Other ancestry in the non_neuro subset | | gnomad_non_neuro_AN_oth_female | 1 / Integer Total number of alleles in female samples of Other ancestry in the non_neuro subset | | gnomad_non_neuro_AN_oth_male | 1 / Integer Total number of alleles in male samples of Other ancestry in the non_neuro subset | | gnomad_non_neuro_AN_popmax | A / Integer Total number of alleles in the population with the maximum AF in the non_neuro subset | | gnomad_non_neuro_AN_raw | 1 / Integer Total number of alleles in samples in the non_neuro subset, before removing low-confidence genotypes | | gnomad_non_neuro_AN_sas | 1 / Integer Total number of alleles in samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AN_sas_female | 1 / Integer Total number of alleles in female samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_AN_sas_male | 1 / Integer Total number of alleles in male samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_faf95 | A / Float Filtering allele frequency (using Poisson 95% CI) for samples in the non_neuro subset | | gnomad_non_neuro_faf95_afr | A / Float Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_faf95_amr | A / Float Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_faf95_eas | A / Float Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_faf95_nfe | A / Float Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_faf95_sas | A / Float Filtering allele frequency (using Poisson 95% CI) for samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_faf99 | A / Float Filtering allele frequency (using Poisson 99% CI) for samples in the non_neuro subset | | gnomad_non_neuro_faf99_afr | A / Float Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_faf99_amr | A / Float Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_faf99_eas | A / Float Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_faf99_nfe | A / Float Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_faf99_sas | A / Float Filtering allele frequency (using Poisson 99% CI) for samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt | A / Integer Count of homozygous individuals in samples in the non_neuro subset | | gnomad_non_neuro_nhomalt_afr | A / Integer Count of homozygous individuals in samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_afr_female | A / Integer Count of homozygous individuals in female samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_afr_male | A / Integer Count of homozygous individuals in male samples of African-American/African ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_amr | A / Integer Count of homozygous individuals in samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_amr_female | A / Integer Count of homozygous individuals in female samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_amr_male | A / Integer Count of homozygous individuals in male samples of Latino ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_asj | A / Integer Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_asj_female | A / Integer Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_asj_male | A / Integer Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_eas | A / Integer Count of homozygous individuals in samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_eas_female | A / Integer Count of homozygous individuals in female samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_eas_jpn | A / Integer Count of homozygous individuals in samples of Japanese ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_eas_kor | A / Integer Count of homozygous individuals in samples of Korean ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_eas_male | A / Integer Count of homozygous individuals in male samples of East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_eas_oea | A / Integer Count of homozygous individuals in samples of Other East Asian ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_female | A / Integer Count of homozygous individuals in female samples in the non_neuro subset | | gnomad_non_neuro_nhomalt_fin | A / Integer Count of homozygous individuals in samples of Finnish ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_fin_female | A / Integer Count of homozygous individuals in female samples of Finnish ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_fin_male | A / Integer Count of homozygous individuals in male samples of Finnish ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_male | A / Integer Count of homozygous individuals in male samples in the non_neuro subset | | gnomad_non_neuro_nhomalt_nfe | A / Integer Count of homozygous individuals in samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_nfe_bgr | A / Integer Count of homozygous individuals in samples of Bulgarian (Eastern European) ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_nfe_est | A / Integer Count of homozygous individuals in samples of Estonian ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_nfe_female | A / Integer Count of homozygous individuals in female samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_nfe_male | A / Integer Count of homozygous individuals in male samples of Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_nfe_nwe | A / Integer Count of homozygous individuals in samples of North-Western European ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_nfe_onf | A / Integer Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_nfe_seu | A / Integer Count of homozygous individuals in samples of Southern European ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_nfe_swe | A / Integer Count of homozygous individuals in samples of Swedish ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_oth | A / Integer Count of homozygous individuals in samples of Other ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_oth_female | A / Integer Count of homozygous individuals in female samples of Other ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_oth_male | A / Integer Count of homozygous individuals in male samples of Other ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_popmax | A / Integer Count of homozygous individuals in the population with the maximum allele frequency in the non_neuro subset | | gnomad_non_neuro_nhomalt_raw | A / Integer Count of homozygous individuals in samples in the non_neuro subset, before removing low-confidence genotypes | | gnomad_non_neuro_nhomalt_sas | A / Integer Count of homozygous individuals in samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_sas_female | A / Integer Count of homozygous individuals in female samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_nhomalt_sas_male | A / Integer Count of homozygous individuals in male samples of South Asian ancestry in the non_neuro subset | | gnomad_non_neuro_popmax | A / String Population with maximum AF in the non_neuro subset | | gnomad_non_topmed_AC | A / Integer Alternate allele count for samples in the non_topmed subset | | gnomad_non_topmed_AC_afr | A / Integer Alternate allele count for samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_AC_afr_female | A / Integer Alternate allele count for female samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_AC_afr_male | A / Integer Alternate allele count for male samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_AC_amr | A / Integer Alternate allele count for samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_AC_amr_female | A / Integer Alternate allele count for female samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_AC_amr_male | A / Integer Alternate allele count for male samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_AC_asj | A / Integer Alternate allele count for samples of Ashkenazi Jewish ancestry in the non_topmed subset | | gnomad_non_topmed_AC_asj_female | A / Integer Alternate allele count for female samples of Ashkenazi Jewish ancestry in the non_topmed subset | | gnomad_non_topmed_AC_asj_male | A / Integer Alternate allele count for male samples of Ashkenazi Jewish ancestry in the non_topmed subset | | gnomad_non_topmed_AC_eas | A / Integer Alternate allele count for samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AC_eas_female | A / Integer Alternate allele count for female samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AC_eas_jpn | A / Integer Alternate allele count for samples of Japanese ancestry in the non_topmed subset | | gnomad_non_topmed_AC_eas_kor | A / Integer Alternate allele count for samples of Korean ancestry in the non_topmed subset | | gnomad_non_topmed_AC_eas_male | A / Integer Alternate allele count for male samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AC_eas_oea | A / Integer Alternate allele count for samples of Other East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AC_female | A / Integer Alternate allele count for female samples in the non_topmed subset | | gnomad_non_topmed_AC_fin | A / Integer Alternate allele count for samples of Finnish ancestry in the non_topmed subset | | gnomad_non_topmed_AC_fin_female | A / Integer Alternate allele count for female samples of Finnish ancestry in the non_topmed subset | | gnomad_non_topmed_AC_fin_male | A / Integer Alternate allele count for male samples of Finnish ancestry in the non_topmed subset | | gnomad_non_topmed_AC_male | A / Integer Alternate allele count for male samples in the non_topmed subset | | gnomad_non_topmed_AC_nfe | A / Integer Alternate allele count for samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_AC_nfe_bgr | A / Integer Alternate allele count for samples of Bulgarian (Eastern European) ancestry in the non_topmed subset | | gnomad_non_topmed_AC_nfe_est | A / Integer Alternate allele count for samples of Estonian ancestry in the non_topmed subset | | gnomad_non_topmed_AC_nfe_female | A / Integer Alternate allele count for female samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_AC_nfe_male | A / Integer Alternate allele count for male samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_AC_nfe_nwe | A / Integer Alternate allele count for samples of North-Western European ancestry in the non_topmed subset | | gnomad_non_topmed_AC_nfe_onf | A / Integer Alternate allele count for samples of Other Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_AC_nfe_seu | A / Integer Alternate allele count for samples of Southern European ancestry in the non_topmed subset | | gnomad_non_topmed_AC_nfe_swe | A / Integer Alternate allele count for samples of Swedish ancestry in the non_topmed subset | | gnomad_non_topmed_AC_oth | A / Integer Alternate allele count for samples of Other ancestry in the non_topmed subset | | gnomad_non_topmed_AC_oth_female | A / Integer Alternate allele count for female samples of Other ancestry in the non_topmed subset | | gnomad_non_topmed_AC_oth_male | A / Integer Alternate allele count for male samples of Other ancestry in the non_topmed subset | | gnomad_non_topmed_AC_popmax | A / Integer Allele count in the population with the maximum AF in the non_topmed subset | | gnomad_non_topmed_AC_raw | A / Integer Alternate allele count for samples in the non_topmed subset, before removing low-confidence genotypes | | gnomad_non_topmed_AC_sas | A / Integer Alternate allele count for samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AC_sas_female | A / Integer Alternate allele count for female samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AC_sas_male | A / Integer Alternate allele count for male samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AF | A / Float Alternate allele frequency in samples in the non_topmed subset | | gnomad_non_topmed_AF_afr | A / Float Alternate allele frequency in samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_AF_afr_female | A / Float Alternate allele frequency in female samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_AF_afr_male | A / Float Alternate allele frequency in male samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_AF_amr | A / Float Alternate allele frequency in samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_AF_amr_female | A / Float Alternate allele frequency in female samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_AF_amr_male | A / Float Alternate allele frequency in male samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_AF_asj | A / Float Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the non_topmed subset | | gnomad_non_topmed_AF_asj_female | A / Float Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the non_topmed subset | | gnomad_non_topmed_AF_asj_male | A / Float Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the non_topmed subset | | gnomad_non_topmed_AF_eas | A / Float Alternate allele frequency in samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AF_eas_female | A / Float Alternate allele frequency in female samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AF_eas_jpn | A / Float Alternate allele frequency in samples of Japanese ancestry in the non_topmed subset | | gnomad_non_topmed_AF_eas_kor | A / Float Alternate allele frequency in samples of Korean ancestry in the non_topmed subset | | gnomad_non_topmed_AF_eas_male | A / Float Alternate allele frequency in male samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AF_eas_oea | A / Float Alternate allele frequency in samples of Other East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AF_female | A / Float Alternate allele frequency in female samples in the non_topmed subset | | gnomad_non_topmed_AF_fin | A / Float Alternate allele frequency in samples of Finnish ancestry in the non_topmed subset | | gnomad_non_topmed_AF_fin_female | A / Float Alternate allele frequency in female samples of Finnish ancestry in the non_topmed subset | | gnomad_non_topmed_AF_fin_male | A / Float Alternate allele frequency in male samples of Finnish ancestry in the non_topmed subset | | gnomad_non_topmed_AF_male | A / Float Alternate allele frequency in male samples in the non_topmed subset | | gnomad_non_topmed_AF_nfe | A / Float Alternate allele frequency in samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_AF_nfe_bgr | A / Float Alternate allele frequency in samples of Bulgarian (Eastern European) ancestry in the non_topmed subset | | gnomad_non_topmed_AF_nfe_est | A / Float Alternate allele frequency in samples of Estonian ancestry in the non_topmed subset | | gnomad_non_topmed_AF_nfe_female | A / Float Alternate allele frequency in female samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_AF_nfe_male | A / Float Alternate allele frequency in male samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_AF_nfe_nwe | A / Float Alternate allele frequency in samples of North-Western European ancestry in the non_topmed subset | | gnomad_non_topmed_AF_nfe_onf | A / Float Alternate allele frequency in samples of Other Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_AF_nfe_seu | A / Float Alternate allele frequency in samples of Southern European ancestry in the non_topmed subset | | gnomad_non_topmed_AF_nfe_swe | A / Float Alternate allele frequency in samples of Swedish ancestry in the non_topmed subset | | gnomad_non_topmed_AF_oth | A / Float Alternate allele frequency in samples of Other ancestry in the non_topmed subset | | gnomad_non_topmed_AF_oth_female | A / Float Alternate allele frequency in female samples of Other ancestry in the non_topmed subset | | gnomad_non_topmed_AF_oth_male | A / Float Alternate allele frequency in male samples of Other ancestry in the non_topmed subset | | gnomad_non_topmed_AF_popmax | A / Float Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry) in the non_topmed subset | | gnomad_non_topmed_AF_raw | A / Float Alternate allele frequency in samples in the non_topmed subset, before removing low-confidence genotypes | | gnomad_non_topmed_AF_sas | A / Float Alternate allele frequency in samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AF_sas_female | A / Float Alternate allele frequency in female samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AF_sas_male | A / Float Alternate allele frequency in male samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AN | 1 / Integer Total number of alleles in samples in the non_topmed subset | | gnomad_non_topmed_AN_afr | 1 / Integer Total number of alleles in samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_AN_afr_female | 1 / Integer Total number of alleles in female samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_AN_afr_male | 1 / Integer Total number of alleles in male samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_AN_amr | 1 / Integer Total number of alleles in samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_AN_amr_female | 1 / Integer Total number of alleles in female samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_AN_amr_male | 1 / Integer Total number of alleles in male samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_AN_asj | 1 / Integer Total number of alleles in samples of Ashkenazi Jewish ancestry in the non_topmed subset | | gnomad_non_topmed_AN_asj_female | 1 / Integer Total number of alleles in female samples of Ashkenazi Jewish ancestry in the non_topmed subset | | gnomad_non_topmed_AN_asj_male | 1 / Integer Total number of alleles in male samples of Ashkenazi Jewish ancestry in the non_topmed subset | | gnomad_non_topmed_AN_eas | 1 / Integer Total number of alleles in samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AN_eas_female | 1 / Integer Total number of alleles in female samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AN_eas_jpn | 1 / Integer Total number of alleles in samples of Japanese ancestry in the non_topmed subset | | gnomad_non_topmed_AN_eas_kor | 1 / Integer Total number of alleles in samples of Korean ancestry in the non_topmed subset | | gnomad_non_topmed_AN_eas_male | 1 / Integer Total number of alleles in male samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AN_eas_oea | 1 / Integer Total number of alleles in samples of Other East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AN_female | 1 / Integer Total number of alleles in female samples in the non_topmed subset | | gnomad_non_topmed_AN_fin | 1 / Integer Total number of alleles in samples of Finnish ancestry in the non_topmed subset | | gnomad_non_topmed_AN_fin_female | 1 / Integer Total number of alleles in female samples of Finnish ancestry in the non_topmed subset | | gnomad_non_topmed_AN_fin_male | 1 / Integer Total number of alleles in male samples of Finnish ancestry in the non_topmed subset | | gnomad_non_topmed_AN_male | 1 / Integer Total number of alleles in male samples in the non_topmed subset | | gnomad_non_topmed_AN_nfe | 1 / Integer Total number of alleles in samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_AN_nfe_bgr | 1 / Integer Total number of alleles in samples of Bulgarian (Eastern European) ancestry in the non_topmed subset | | gnomad_non_topmed_AN_nfe_est | 1 / Integer Total number of alleles in samples of Estonian ancestry in the non_topmed subset | | gnomad_non_topmed_AN_nfe_female | 1 / Integer Total number of alleles in female samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_AN_nfe_male | 1 / Integer Total number of alleles in male samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_AN_nfe_nwe | 1 / Integer Total number of alleles in samples of North-Western European ancestry in the non_topmed subset | | gnomad_non_topmed_AN_nfe_onf | 1 / Integer Total number of alleles in samples of Other Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_AN_nfe_seu | 1 / Integer Total number of alleles in samples of Southern European ancestry in the non_topmed subset | | gnomad_non_topmed_AN_nfe_swe | 1 / Integer Total number of alleles in samples of Swedish ancestry in the non_topmed subset | | gnomad_non_topmed_AN_oth | 1 / Integer Total number of alleles in samples of Other ancestry in the non_topmed subset | | gnomad_non_topmed_AN_oth_female | 1 / Integer Total number of alleles in female samples of Other ancestry in the non_topmed subset | | gnomad_non_topmed_AN_oth_male | 1 / Integer Total number of alleles in male samples of Other ancestry in the non_topmed subset | | gnomad_non_topmed_AN_popmax | A / Integer Total number of alleles in the population with the maximum AF in the non_topmed subset | | gnomad_non_topmed_AN_raw | 1 / Integer Total number of alleles in samples in the non_topmed subset, before removing low-confidence genotypes | | gnomad_non_topmed_AN_sas | 1 / Integer Total number of alleles in samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AN_sas_female | 1 / Integer Total number of alleles in female samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_AN_sas_male | 1 / Integer Total number of alleles in male samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_faf95 | A / Float Filtering allele frequency (using Poisson 95% CI) for samples in the non_topmed subset | | gnomad_non_topmed_faf95_afr | A / Float Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_faf95_amr | A / Float Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_faf95_eas | A / Float Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_faf95_nfe | A / Float Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_faf95_sas | A / Float Filtering allele frequency (using Poisson 95% CI) for samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_faf99 | A / Float Filtering allele frequency (using Poisson 99% CI) for samples in the non_topmed subset | | gnomad_non_topmed_faf99_afr | A / Float Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_faf99_amr | A / Float Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_faf99_eas | A / Float Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_faf99_nfe | A / Float Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_faf99_sas | A / Float Filtering allele frequency (using Poisson 99% CI) for samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt | A / Integer Count of homozygous individuals in samples in the non_topmed subset | | gnomad_non_topmed_nhomalt_afr | A / Integer Count of homozygous individuals in samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_afr_female | A / Integer Count of homozygous individuals in female samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_afr_male | A / Integer Count of homozygous individuals in male samples of African-American/African ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_amr | A / Integer Count of homozygous individuals in samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_amr_female | A / Integer Count of homozygous individuals in female samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_amr_male | A / Integer Count of homozygous individuals in male samples of Latino ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_asj | A / Integer Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_asj_female | A / Integer Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_asj_male | A / Integer Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_eas | A / Integer Count of homozygous individuals in samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_eas_female | A / Integer Count of homozygous individuals in female samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_eas_jpn | A / Integer Count of homozygous individuals in samples of Japanese ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_eas_kor | A / Integer Count of homozygous individuals in samples of Korean ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_eas_male | A / Integer Count of homozygous individuals in male samples of East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_eas_oea | A / Integer Count of homozygous individuals in samples of Other East Asian ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_female | A / Integer Count of homozygous individuals in female samples in the non_topmed subset | | gnomad_non_topmed_nhomalt_fin | A / Integer Count of homozygous individuals in samples of Finnish ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_fin_female | A / Integer Count of homozygous individuals in female samples of Finnish ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_fin_male | A / Integer Count of homozygous individuals in male samples of Finnish ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_male | A / Integer Count of homozygous individuals in male samples in the non_topmed subset | | gnomad_non_topmed_nhomalt_nfe | A / Integer Count of homozygous individuals in samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_nfe_bgr | A / Integer Count of homozygous individuals in samples of Bulgarian (Eastern European) ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_nfe_est | A / Integer Count of homozygous individuals in samples of Estonian ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_nfe_female | A / Integer Count of homozygous individuals in female samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_nfe_male | A / Integer Count of homozygous individuals in male samples of Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_nfe_nwe | A / Integer Count of homozygous individuals in samples of North-Western European ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_nfe_onf | A / Integer Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_nfe_seu | A / Integer Count of homozygous individuals in samples of Southern European ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_nfe_swe | A / Integer Count of homozygous individuals in samples of Swedish ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_oth | A / Integer Count of homozygous individuals in samples of Other ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_oth_female | A / Integer Count of homozygous individuals in female samples of Other ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_oth_male | A / Integer Count of homozygous individuals in male samples of Other ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_popmax | A / Integer Count of homozygous individuals in the population with the maximum allele frequency in the non_topmed subset | | gnomad_non_topmed_nhomalt_raw | A / Integer Count of homozygous individuals in samples in the non_topmed subset, before removing low-confidence genotypes | | gnomad_non_topmed_nhomalt_sas | A / Integer Count of homozygous individuals in samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_sas_female | A / Integer Count of homozygous individuals in female samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_nhomalt_sas_male | A / Integer Count of homozygous individuals in male samples of South Asian ancestry in the non_topmed subset | | gnomad_non_topmed_popmax | A / String Population with maximum AF in the non_topmed subset | | gnomad_nonpar | 0 / Flag Variant (on sex chromosome) falls outside a pseudoautosomal region | | gnomad_pab_max | A / Float Maximum p-value over callset for binomial test of observed allele balance for a heterozygous genotype, given expectation of AB=0.5 | | gnomad_popmax | A / String Population with maximum AF | | gnomad_rf_label | 1 / String Random forest training label | | gnomad_rf_negative_label | 0 / Flag Variant was labelled as a negative example for training of random forest model | | gnomad_rf_positive_label | 0 / Flag Variant was labelled as a positive example for training of random forest model | | gnomad_rf_tp_probability | 1 / Float Random forest prediction probability for a site being a true variant | | gnomad_rf_train | 0 / Flag Variant was used in training random forest model | | gnomad_segdup | 0 / Flag Variant falls within a segmental duplication region | | gnomad_transmitted_singleton | 0 / Flag Variant was a callset-wide doubleton that was transmitted within a family (i.e., a singleton amongst unrelated sampes in cohort) | | gnomad_variant_type | 1 / String Variant type (snv, indel, multi-snv, multi-indel, or mixed) | | gnomad_vep | . / String / [Ensembl Variant Effect Predictor (VEP)](https://asia.ensembl.org/info/docs/tools/vep/index.html) Consequence annotations from Ensembl VEP. Format: Allele\|Consequence\|IMPACT\|SYMBOL\|Gene\|Feature_type\|Feature\|BIOTYPE\|EXON\|INTRON\|HGVSc\|HGVSp\|cDNA_position\|CDS_position\|Protein_position\|Amino_acids\|Codons\|Existing_variation\|ALLELE_NUM\|DISTANCE\|STRAND\|FLAGS\|VARIANT_CLASS\|MINIMISED\|SYMBOL_SOURCE\|HGNC_ID\|CANONICAL\|TSL\|APPRIS\|CCDS\|ENSP\|SWISSPROT\|TREMBL\|UNIPARC\|GENE_PHENO\|SIFT\|PolyPhen\|DOMAINS\|HGVS_OFFSET\|GMAF\|AFR_MAF\|AMR_MAF\|EAS_MAF\|EUR_MAF\|SAS_MAF\|AA_MAF\|EA_MAF\|ExAC_MAF\|ExAC_Adj_MAF\|ExAC_AFR_MAF\|ExAC_AMR_MAF\|ExAC_EAS_MAF\|ExAC_FIN_MAF\|ExAC_NFE_MAF\|ExAC_OTH_MAF\|ExAC_SAS_MAF\|CLIN_SIG\|SOMATIC\|PHENO\|PUBMED\|MOTIF_NAME\|MOTIF_POS\|HIGH_INF_POS\|MOTIF_SCORE_CHANGE\|LoF\|LoF_filter\|LoF_flags\|LoF_info 參考資料： - [【Survey】Ensembl 與 VEP](https://hackmd.io/@CynthiaChuang/Survey-Ensembl-and-VEP) | | gnomad_was_mixed | 0 / Flag Variant type was mixed |