---
# System prepended metadata

title: VCF - D15780_S13_L001.vcf (小資料)
tags: [基因體, 基因體/二級分析, 二級分析, VCF, 生物資訊]

---

VCF - D15780_S13_L001.vcf (小資料)
===
###### tags: `基因體/二級分析`
###### tags: `生物資訊`, `基因體`, `二級分析`, `VCF`

<br>

[TOC]

<br>

## 目錄：
- VCF 基本結構
- [D15780_S13_L001.vcf - header](#OUTPUT3HCD15780_S13_L001vcf---header)
- [D15780_S13_L001.vcf - body - Sample](#OUTPUT3HCD15780_S13_L001vcf---body---Sample)
- [D15780_S13_L001.vcf - body - all](#OUTPUT3HCD15780_S13_L001vcf---body---all)

===================================

![](https://us.v-cdn.net/5019796/uploads/FileUpload/70/9eec0b6faaa664f7630abddaf15594.png)

<br>

## OUTPUT/3.HC/D15780_S13_L001.vcf - header
- 檔案格式＆版本
  <span style="font-family: Menlo,Monaco,Consolas,'Courier New',monospace;">##<span style="background: lightgray">fileformat</span>=**VCFv4.2**</span>

- 過濾器，用來過濾品質不好的序列
  如某個點有突變(SNP)，但可信度不高，就過濾掉
  <span style="font-family: Menlo,Monaco,Consolas,'Courier New',monospace;">##<span style="background: lightgray">FILTER</span>=<ID=**LowQual**,Description="**Low quality**"></span>

- 產生此 VCF 檔的 GATK 指令
  <span style="font-family: Menlo,Monaco,Consolas,'Courier New',monospace;">##<span style="background: lightgray">GATKCommandLine</span>=<ID=**HaplotypeCaller**,
    CommandLine="**HaplotypeCaller**
        ...
        --dbsnp /Everythings/misc/bundle/b37/dbsnp_138.b37.vcf
        ...(more)..
        --output D15780_S13_L001.vcf
        ...(more)..
        --reference /Everythings/misc/bundle/b37/human_g1k_v37_decoy.fasta
        ...(more)",
    Version=4.1.0.0,
    Date="July 5, 2019 5:26:27 PM CST"></span>
    
- 產生此 VCF 檔的來源工具
  <span style="font-family: Menlo,Monaco,Consolas,'Courier New',monospace;">##<span style="background: lightgray">source</span>=**HaplotypeCaller**</span>
  
- header 原始內容
    ```
    ##fileformat=VCFv4.2
    檔案格式＆版本
    
    ##FILTER=<ID=LowQual,Description="Low quality">
    過濾器，用來過濾品質不好的序列
    如某個點有突變(SNP)，但可信度不高，就過濾掉
    
    ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
    ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
    ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
    ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
    ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
    
    ##GATKCommandLine=<ID=HaplotypeCaller,CommandLine="HaplotypeCaller  --dbsnp /Everythings/misc/bundle/b37/dbsnp_138.b37.vcf --pair-hmm-implementation AVX_LOGLESS_CACHING_OMP --native-pair-hmm-threads 2 --smith-waterman AVX_ENABLED --output D15780_S13_L001.vcf --intervals /Everythings/misc/bed/b37/Agilent_SureSelect_Human_All_Exon_V7_S31285117_Regions.b37.bed --input D15780_S13_L001.sorted.dedup.recal.bam --read-index D15780_S13_L001.sorted.dedup.recal.bam.bai --reference /Everythings/misc/bundle/b37/human_g1k_v37_decoy.fasta --tmp-dir .  --gvcf-gq-bands 1 --gvcf-gq-bands 2 --gvcf-gq-bands 3 --gvcf-gq-bands 4 --gvcf-gq-bands 5 --gvcf-gq-bands 6 --gvcf-gq-bands 7 --gvcf-gq-bands 8 --gvcf-gq-bands 9 --gvcf-gq-bands 10 --gvcf-gq-bands 11 --gvcf-gq-bands 12 --gvcf-gq-bands 13 --gvcf-gq-bands 14 --gvcf-gq-bands 15 --gvcf-gq-bands 16 --gvcf-gq-bands 17 --gvcf-gq-bands 18 --gvcf-gq-bands 19 --gvcf-gq-bands 20 --gvcf-gq-bands 21 --gvcf-gq-bands 22 --gvcf-gq-bands 23 --gvcf-gq-bands 24 --gvcf-gq-bands 25 --gvcf-gq-bands 26 --gvcf-gq-bands 27 --gvcf-gq-bands 28 --gvcf-gq-bands 29 --gvcf-gq-bands 30 --gvcf-gq-bands 31 --gvcf-gq-bands 32 --gvcf-gq-bands 33 --gvcf-gq-bands 34 --gvcf-gq-bands 35 --gvcf-gq-bands 36 --gvcf-gq-bands 37 --gvcf-gq-bands 38 --gvcf-gq-bands 39 --gvcf-gq-bands 40 --gvcf-gq-bands 41 --gvcf-gq-bands 42 --gvcf-gq-bands 43 --gvcf-gq-bands 44 --gvcf-gq-bands 45 --gvcf-gq-bands 46 --gvcf-gq-bands 47 --gvcf-gq-bands 48 --gvcf-gq-bands 49 --gvcf-gq-bands 50 --gvcf-gq-bands 51 --gvcf-gq-bands 52 --gvcf-gq-bands 53 --gvcf-gq-bands 54 --gvcf-gq-bands 55 --gvcf-gq-bands 56 --gvcf-gq-bands 57 --gvcf-gq-bands 58 --gvcf-gq-bands 59 --gvcf-gq-bands 60 --gvcf-gq-bands 70 --gvcf-gq-bands 80 --gvcf-gq-bands 90 --gvcf-gq-bands 99 --indel-size-to-eliminate-in-ref-model 10 --use-alleles-trigger false --disable-optimizations false --just-determine-active-regions false --dont-genotype false --max-mnp-distance 0 --dont-trim-active-regions false --max-disc-ar-extension 25 --max-gga-ar-extension 300 --padding-around-indels 150 --padding-around-snps 20 --adaptive-pruning false --do-not-recover-dangling-branches false --recover-dangling-heads false --consensus false --kmer-size 10 --kmer-size 25 --dont-increase-kmer-sizes-for-cycles false --allow-non-unique-kmers-in-ref false --num-pruning-samples 1 --min-dangling-branch-length 4 --max-num-haplotypes-in-population 128 --min-pruning 2 --adaptive-pruning-initial-error-rate 0.001 --pruning-lod-threshold 1.0 --max-unpruned-variants 100 --debug-graph-transformations false --kmer-length-for-read-error-correction 25 --min-observations-for-kmer-to-be-solid 20 --likelihood-calculation-engine PairHMM --base-quality-score-threshold 18 --pair-hmm-gap-continuation-penalty 10 --pcr-indel-model CONSERVATIVE --phred-scaled-global-read-mismapping-rate 45 --native-pair-hmm-use-double-precision false --debug false --use-filtered-reads-for-annotations false --bam-writer-type CALLED_HAPLOTYPES --dont-use-soft-clipped-bases false --capture-assembly-failure-bam false --error-correct-reads false --do-not-run-physical-phasing false --min-base-quality-score 10 --correct-overlapping-quality false --emit-ref-confidence NONE --use-new-qual-calculator true --use-old-qual-calculator false --annotate-with-num-discovered-alleles false --heterozygosity 0.001 --indel-heterozygosity 1.25E-4 --heterozygosity-stdev 0.01 --standard-min-confidence-threshold-for-calling 30.0 --max-alternate-alleles 6 --max-genotype-count 1024 --sample-ploidy 2 --num-reference-samples-if-no-call 0 --genotyping-mode DISCOVERY --genotype-filtered-alleles false --contamination-fraction-to-filter 0.0 --output-mode EMIT_VARIANTS_ONLY --all-site-pls false --min-assembly-region-size 50 --max-assembly-region-size 300 --assembly-region-padding 100 --max-reads-per-alignment-start 50 --active-probability-threshold 0.002 --max-prob-propagation-distance 50 --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays  --disable-tool-default-read-filters false --minimum-mapping-quality 20 --disable-tool-default-annotations false --enable-all-annotations false",Version=4.1.0.0,Date="July 5, 2019 5:26:27 PM CST">
    產生此 VCF 檔的 GATK 指令
    
    ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
    ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
    ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
    ##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
    ##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
    ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
    ##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
    ##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
    ##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
    ##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
    ##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
    ##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
    ##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
    ##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
    ##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
    ##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
    ##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
    
    底下是用 contig(片段重疊群) 來紀錄各個染色體，及其他序列的長度
    如人類的第1～22條是體染色體，
    第23條(X, Y)是性染色體
    MT(mitochondrion) 粒線體染色體
    GLXXXXXX 無法定位的因體片段序列
    NC_007605 (NC:Nucleotide, 核苷酸) 人類疱疹病毒第四型
    
    體染色體的排序是根據序列，從長到短排序
    其中第21, 22條搞顛倒
    那是由於早年科學家的染色及辨識技術未臻成熟，致產生編排上的小誤差
    ##contig=<ID=1,length=249250621>
    ##contig=<ID=2,length=243199373>
    ##contig=<ID=3,length=198022430>
    ##contig=<ID=4,length=191154276>
    ##contig=<ID=5,length=180915260>
    ##contig=<ID=6,length=171115067>
    ##contig=<ID=7,length=159138663>
    ##contig=<ID=8,length=146364022>
    ##contig=<ID=9,length=141213431>
    ##contig=<ID=10,length=135534747>
    ##contig=<ID=11,length=135006516>
    ##contig=<ID=12,length=133851895>
    ##contig=<ID=13,length=115169878>
    ##contig=<ID=14,length=107349540>
    ##contig=<ID=15,length=102531392>
    ##contig=<ID=16,length=90354753>
    ##contig=<ID=17,length=81195210>
    ##contig=<ID=18,length=78077248>
    ##contig=<ID=19,length=59128983>
    ##contig=<ID=20,length=63025520>
    ##contig=<ID=21,length=48129895>
    ##contig=<ID=22,length=51304566>
    ##contig=<ID=X,length=155270560>
    ##contig=<ID=Y,length=59373566>
    ##contig=<ID=MT,length=16569>
    
    GL000207.1
    https://www.ncbi.nlm.nih.gov/nuccore/GL000207.1?report=genbank
    
    GL000226.1
    https://www.ncbi.nlm.nih.gov/nuccore/224183275/
    
    ##contig=<ID=GL000207.1,length=4262>
    ##contig=<ID=GL000226.1,length=15008>
    ##contig=<ID=GL000229.1,length=19913>
    ##contig=<ID=GL000231.1,length=27386>
    ##contig=<ID=GL000210.1,length=27682>
    ##contig=<ID=GL000239.1,length=33824>
    ##contig=<ID=GL000235.1,length=34474>
    ##contig=<ID=GL000201.1,length=36148>
    ##contig=<ID=GL000247.1,length=36422>
    ##contig=<ID=GL000245.1,length=36651>
    ##contig=<ID=GL000197.1,length=37175>
    ##contig=<ID=GL000203.1,length=37498>
    ##contig=<ID=GL000246.1,length=38154>
    ##contig=<ID=GL000249.1,length=38502>
    ##contig=<ID=GL000196.1,length=38914>
    ##contig=<ID=GL000248.1,length=39786>
    ##contig=<ID=GL000244.1,length=39929>
    ##contig=<ID=GL000238.1,length=39939>
    ##contig=<ID=GL000202.1,length=40103>
    ##contig=<ID=GL000234.1,length=40531>
    ##contig=<ID=GL000232.1,length=40652>
    ##contig=<ID=GL000206.1,length=41001>
    ##contig=<ID=GL000240.1,length=41933>
    ##contig=<ID=GL000236.1,length=41934>
    ##contig=<ID=GL000241.1,length=42152>
    ##contig=<ID=GL000243.1,length=43341>
    ##contig=<ID=GL000242.1,length=43523>
    ##contig=<ID=GL000230.1,length=43691>
    ##contig=<ID=GL000237.1,length=45867>
    ##contig=<ID=GL000233.1,length=45941>
    ##contig=<ID=GL000204.1,length=81310>
    ##contig=<ID=GL000198.1,length=90085>
    ##contig=<ID=GL000208.1,length=92689>
    ##contig=<ID=GL000191.1,length=106433>
    ##contig=<ID=GL000227.1,length=128374>
    ##contig=<ID=GL000228.1,length=129120>
    ##contig=<ID=GL000214.1,length=137718>
    ##contig=<ID=GL000221.1,length=155397>
    ##contig=<ID=GL000209.1,length=159169>
    ##contig=<ID=GL000218.1,length=161147>
    ##contig=<ID=GL000220.1,length=161802>
    ##contig=<ID=GL000213.1,length=164239>
    ##contig=<ID=GL000211.1,length=166566>
    ##contig=<ID=GL000199.1,length=169874>
    ##contig=<ID=GL000217.1,length=172149>
    ##contig=<ID=GL000216.1,length=172294>
    ##contig=<ID=GL000215.1,length=172545>
    ##contig=<ID=GL000205.1,length=174588>
    ##contig=<ID=GL000219.1,length=179198>
    ##contig=<ID=GL000224.1,length=179693>
    ##contig=<ID=GL000223.1,length=180455>
    ##contig=<ID=GL000195.1,length=182896>
    ##contig=<ID=GL000212.1,length=186858>
    ##contig=<ID=GL000222.1,length=186861>
    ##contig=<ID=GL000200.1,length=187035>
    ##contig=<ID=GL000193.1,length=189789>
    ##contig=<ID=GL000194.1,length=191469>
    ##contig=<ID=GL000225.1,length=211173>
    ##contig=<ID=GL000192.1,length=547496>
    ##contig=<ID=NC_007605,length=171823>
    ##contig=<ID=hs37d5,length=35477943>
    
    產生此 VCF 檔的來源工具
    ##source=HaplotypeCaller
    ```


<br>
<hr>
<br>

## OUTPUT/3.HC/D15780_S13_L001.vcf - body - Sample
```
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	D15780_S13_L001
2	3749151	rs34308920	GGAA	G	78.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.36;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
X	24381387	rs1207577	G	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
X	24381409	rs142864280	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
```


| 欄位                 | Chrom-2 | Chrom-X1 | Chrom-X2 |
| ------------------- | -------- | -------- | -------- |
| **#CHROM**          | 2 | X | X |
| **POS**             | 3749151 | 24381387 | 24381409 |
| **ID**              | rs34308920 | rs1207577 | rs142864280 |
| **REF**             | GGAA | G | G |
| **ALT**             | G | C | A |
| **QUAL**            | 78.28 | 37.28 | 37.28 |
| **FILTER**          | . | . | . |
| **INFO**            | AC=2;<br>AF=1.00;<br>AN=2;<br>DB;<br>DP=2;<br>ExcessHet=3.0103;<br>FS=0.000;<br>MLEAC=1;<br>MLEAF=0.500;<br>MQ=60.00;<br>QD=25.36;<br>SOR=0.693 | AC=2;<br>AF=1.00;<br>AN=2;<br>DB;<br>DP=2;<br>ExcessHet=3.0103;<br>FS=0.000;<br>MLEAC=1;<br>MLEAF=0.500;<br>MQ=60.00;<br>QD=18.64;<br>SOR=0.693     | AC=2;<br>AF=1.00;<br>AN=2;<br>DB;<br>DP=2;<br>ExcessHet=3.0103;<br>FS=0.000;<br>MLEAC=1;<br>MLEAF=0.500;<br>MQ=60.00;<br>QD=18.64;<br>SOR=0.693 |
| **FORMAT**          | GT:AD:DP:GQ:PL | GT:AD:DP:GQ:PL | GT:AD:DP:GQ:PL |
| **D15780_S13_L001** | 1/1:0,2:2:6:90,6,0 | 1/1:0,2:2:6:49,6,0 | 1/1:0,2:2:6:49,6,0 |

- ### x1 (POS=24381387)
    - 屬性：
        ![](https://i.imgur.com/QRQzXT1.png)
        <br>![](https://i.imgur.com/5EiRl2i.png)
    - 最後兩個欄位
        **FORMAT**：GT:AD:DP:GQ:PL
        **D15780_S13_L001**：1/1:0,2:2:6:49,6,0
        - GT：1/1 (Genotype)
        - AD：0,2 (Allele Depth)
        - DP：2 (Read Depth)
        - GQ：6 (Genotype Quality)
        - PL：49,6,0 (Phred-scaled likelihoods)

<br>
<hr>
<br>

## OUTPUT/3.HC/D15780_S13_L001.vcf - body - all
```
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	D15780_S13_L001
1	69270	rs201219564	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=25.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	2453163	rs78763061	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	10190839	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	11008206	rs186087187	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	11087559	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	11849447	rs868014	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	16903912	rs61772344	T	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.03;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	17413121	rs2076615	A	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	22191454	rs897471	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	24134721	rs719400	T	C	3296.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.718;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.58;ReadPosRankSum=-0.615;SOR=0.795	GT:AD:DP:GQ:PL	1/1:2,122:124:99:3310,322,0
1	45973928	rs2275276	G	A	3365.03	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.14;SOR=0.828	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3379,370,0
1	53675934	rs140853350	T	C	32.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:30:40,0,30
1	100472604	rs534252	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	146401761	.	A	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	153652292	.	G	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	159505098	.	T	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	166135225	.	GC	G	59.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
1	167097390	.	T	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	169510972	.	T	C	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	171509327	rs760644	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	196254856	.	A	G	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	197129042	.	C	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
1	247419509	rs1778540	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	1664654	rs17841813	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	3749151	rs34308920	GGAA	G	78.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.36;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
2	37873467	.	G	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	37873584	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	55563919	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	90121675	rs7371197	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	97164943	rs3731939	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	107084739	rs6718521	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	120362357	.	C	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	136562494	.	A	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	150432353	.	A	T	796.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=0.248;SOR=0.732	GT:AD:DP:GQ:PL	0/1:57,41:98:99:804,0,1256
2	150432976	rs11545261	C	T	1490.03	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.59;SOR=0.931	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1504,161,0
2	160884747	.	T	C	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	179412146	.	C	T	32.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:33:40,0,33
2	179427821	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	179473995	.	T	C	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	179644035	rs1552280	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	183799558	rs9288088	G	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	198950104	.	C	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	202598113	rs2276615	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	210704131	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	224746686	.	G	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
2	225244437	.	GT	G	53.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:65,6,0
3	9091151	rs610457	C	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
3	15643043	rs2019160	A	G	17370.03	.	AC=2;AF=1.00;AN=2;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.16;SOR=1.131	GT:AD:DP:GQ:PL	1/1:0,576:576:99:17384,1721,0
3	43121638	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
3	48612938	.	T	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
3	69230801	rs9836305	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
3	135978029	rs117604575	C	T	669.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DB;DP=61;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=1.207;SOR=0.880	GT:AD:DP:GQ:PL	0/1:28,31:59:99:677,0,652
3	136045224	rs111675085	G	T	55.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=0.000;SOR=0.693	GT:AD:DP:GQ:PL	0/1:2,2:4:60:63,0,60
3	155232561	.	C	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
3	171510238	rs3934620	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
3	182755209	rs2270968	T	G	1233.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=-0.645;SOR=0.680	GT:AD:DP:GQ:PL	0/1:97,62:159:99:1241,0,2344
3	182790249	rs7622479	G	A	3409.03	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.06;SOR=0.826	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3423,376,0
3	196674972	rs574365	C	T	78.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.73;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
3	196674973	rs573708	T	C	78.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.97;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
4	1397297	rs11945310	T	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
4	2746131	rs201211260	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
4	6302519	rs1801212	G	A	74.80	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.93;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,3:3:9:88,9,0
4	69512957	.	C	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
4	74285239	rs962004	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
4	85742511	.	T	C	32.61	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=0.000;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:18:40,0,18
4	85762385	rs2046402	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
4	103557077	rs2866413	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
4	114278277	rs3733617	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
4	128565113	.	G	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
4	146572227	rs11721553	G	A	817.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;DB;DP=103;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=1.100;SOR=0.580	GT:AD:DP:GQ:PL	0/1:63,40:103:99:825,0,1343
4	155243573	rs13109747	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
4	155243604	rs1352714	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
4	164247040	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
5	16766269	rs77813219	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
5	35704700	rs372405006	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
5	65108215	rs2254485	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
5	70945075	rs10064079	A	G	4222.03	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.42;SOR=0.859	GT:AD:DP:GQ:PL	1/1:0,154:154:99:4236,459,0
5	95748038	.	T	C	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
5	112227939	rs712666	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
5	139666906	rs10477348	A	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
5	139943808	.	A	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
5	140764690	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
5	145894896	rs7709485	G	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
5	178408795	rs373757775	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
6	26107944	rs12526092	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
6	29364787	rs3128853	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
6	30882634	rs1264302	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
6	30882781	rs1264301	G	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
6	49403282	rs8589	T	C	1449.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;DB;DP=238;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=1.249;SOR=0.804	GT:AD:DP:GQ:PL	0/1:162,76:238:99:1457,0,3807
6	49419231	.	C	T	4100.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;DP=446;ExcessHet=3.0103;FS=4.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-1.342;SOR=1.025	GT:AD:DP:GQ:PL	0/1:251,194:445:99:4108,0,5735
6	49425521	rs2229384	C	T	2402.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-0.645;SOR=0.724	GT:AD:DP:GQ:PL	0/1:142,117:259:99:2410,0,3175
6	49426857	.	C	T	3381.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;DP=292;ExcessHet=3.0103;FS=4.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=0.457;SOR=0.993	GT:AD:DP:GQ:PL	0/1:148,144:292:99:3389,0,3563
6	66204945	rs12193967	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
6	87965866	.	C	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
6	90459454	rs4053618	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
7	2395043	rs78680793	G	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
7	23821056	.	T	C	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
7	44281335	.	C	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
7	148851273	rs3801979	G	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
7	151483573	.	T	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
7	151932908	rs112326730	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=21.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
8	24211331	rs7814768	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
8	101153024	rs1460934	G	A	36.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.14;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:48,6,0
8	125579973	rs6470251	C	T	51.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=1.645;SOR=1.179	GT:AD:DP:GQ:PL	0/1:2,3:5:34:59,0,34
8	125579990	rs6470252	C	T	39.61	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=1.150;SOR=0.916	GT:AD:DP:GQ:PL	0/1:1,3:4:20:47,0,20
8	144620183	rs4874147	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
9	5300206	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
9	32543575	.	A	G	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
9	32543635	.	T	C	67.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=33.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
9	32543643	.	G	A	67.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=33.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
9	80851350	rs10867166	G	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
9	107620867	rs2230806	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
9	135263573	rs556386	G	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
10	26446312	rs3758449	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
10	97141523	rs2274490	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
10	99221876	.	C	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
10	101373675	.	T	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
10	124066764	.	A	G	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
11	608114	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
11	1887806	rs7938342	T	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
11	33373365	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
11	57982229	rs1966836	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
11	64577238	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
11	65732651	rs550435	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
11	107992346	rs3741056	G	C	917.03	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.20;SOR=0.869	GT:AD:DP:GQ:PL	1/1:0,35:35:99:931,104,0
11	124747427	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
11	129744746	rs367799283	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
12	994014	rs10849577	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
12	12630131	.	G	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
12	25311489	rs10842496	G	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
12	26752225	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
12	26834923	rs78919001	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
12	51402905	rs445520	T	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
12	66605228	rs1152888	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
12	75715330	rs10879901	C	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
12	85466723	rs17012533	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
12	96387765	rs2302628	T	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
12	97102578	rs7968231	G	A	35.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=17.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:47,6,0
12	103237468	rs772897	G	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
12	109994870	rs9593	A	T	595.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=-0.850;SOR=0.586	GT:AD:DP:GQ:PL	0/1:20,27:47:99:603,0,456
12	110011229	rs10774774	G	T	2225.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;DB;DP=174;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=2.512;SOR=0.774	GT:AD:DP:GQ:PL	0/1:111,63:174:99:2233,0,5280
12	110011230	rs10774775	C	T	2225.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;DB;DP=173;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=2.431;SOR=0.758	GT:AD:DP:GQ:PL	0/1:110,63:173:99:2233,0,5280
12	122261456	rs3741593	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
13	21371102	.	G	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
13	45147517	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
13	80911525	rs504122	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
14	24470690	.	T	TA	69.32	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.00;QD=34.66;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
14	24729844	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
14	44974966	rs1959379	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
14	44975052	rs3825630	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
14	44975606	rs3809429	G	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
14	73014061	rs61299139	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
14	80164171	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
14	97321648	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
14	97321689	rs2230532	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
14	100834796	.	A	G	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
14	102457886	.	T	C	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
14	103059413	.	G	GC	52.32	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.16;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:64,6,0
14	103059447	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
14	105398669	.	T	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
14	106090952	rs375494663	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
15	41105926	rs690347	T	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
15	41679717	rs73407109	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
15	85478410	rs2242048	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
16	424815	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
16	3169696	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
16	18823379	rs2606556	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
16	20561190	rs7499739	G	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
16	57689385	rs1801257	C	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
16	68025801	rs255051	G	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
16	77233394	rs4888607	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
16	88499539	rs9931465	C	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
16	89661807	rs12445560	C	T	36.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.14;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:48,6,0
17	7121041	.	G	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
17	7400266	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
17	7453475	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
17	11833287	rs2286303	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
17	14095309	rs2230354	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
17	17925083	.	A	G	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
17	19564634	rs1800869	C	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
17	27580756	rs1047790	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
17	34100350	rs58543174	G	GC	69.32	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.66;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
17	40120421	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
17	40364033	.	C	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
17	48628470	rs9913430	T	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
17	63533087	rs145353986	C	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
17	63533602	.	AGTG	A	31.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=0.149;SOR=0.260	GT:AD:DP:GQ:PL	0/1:15,2:17:39:39,0,716
17	63533732	.	ATGG	A	31.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-0.745;SOR=0.582	GT:AD:DP:GQ:PL	0/1:15,2:17:39:39,0,645
17	63533768	rs1133683	G	A	248.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;DB;DP=16;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.54;ReadPosRankSum=-2.999;SOR=0.636	GT:AD:DP:GQ:PL	0/1:9,7:16:99:256,0,534
17	63533789	rs9915936	T	C	245.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;DB;DP=17;ExcessHet=3.0103;FS=4.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=-2.928;SOR=0.595	GT:AD:DP:GQ:PL	0/1:10,7:17:99:253,0,556
17	76503405	.	G	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
17	78935197	rs9899178	C	T	35.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=17.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:47,6,0
17	78935233	.	G	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
18	2724930	rs633422	A	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
18	21119414	.	G	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
18	28666526	rs35717505	T	TTAA	78.32	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=27.24;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
18	47803354	rs140686	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
18	48331553	rs2849233	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
18	66504459	rs572020	A	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
18	77475486	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	830854	rs595844	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	1063569	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	1528001	.	C	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	2273037	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	5231419	.	A	G	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	8578000	rs1064010	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	15587202	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	39018728	rs908644	C	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	42930695	.	C	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	48258717	rs1804994	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	48258772	rs11083895	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	50789859	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	51485622	rs2659067	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	54946764	.	G	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	55668722	rs113899745	C	CCTGT	78.32	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.20;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
19	55690373	rs201746906	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
19	56089543	.	G	A	78.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.00;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
19	56089549	rs199499964	G	A	78.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.56;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
20	1285933	rs3795139	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
20	20177230	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
20	47253150	rs2664521	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
20	48808269	.	C	T	32.61	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=-0.967;SOR=0.223	GT:AD:DP:GQ:PL	0/1:1,2:3:16:40,0,16
20	52601937	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
21	33719695	rs2070378	C	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
21	38309459	rs61732502	C	T	6786.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;DB;DP=714;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=1.597;SOR=0.745	GT:AD:DP:GQ:PL	0/1:391,321:712:99:6794,0,9281
21	38309619	rs61732504	C	A	3871.60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.832;DB;DP=404;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=0.842;SOR=0.759	GT:AD:DP:GQ:PL	0/1:227,175:402:99:3879,0,5949
21	38525603	rs7284020	A	G	36.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.14;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:48,6,0
21	42613839	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
22	23114327	rs6003299	T	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
22	23114350	rs5996382	A	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
22	23247082	rs2009433	C	G	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
22	23247095	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
X	24381387	rs1207577	G	C	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
X	24381409	rs142864280	G	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
X	104463840	.	C	T	37.28	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
X	135474420	rs1329546	C	A	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.64;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
```