---
tags: Galaxy Team
---

# Galaxy Team
The objective of this is to document the work, progress and efforts of the team during the Codefest. Members of the team should be able to check in to this document to find project details, instructions, design descriptions, etc. as needed fo the Codefest activities.

## Team Lead

| Name | Organization | Contact | Time Zone |
|------|--------------|-----------|-----------|
| Stephen Ficklin | Washington State Univ. | [e-mail] | US Pacific |

## Members

| Name | Organization | Contact | Time Zone |
|------|--------------|-----------|-----------|
| Irene Cobo | Univ. of Connecticut | [e-mail] | US Eastern |
| Jill Wegrzyn | Univ. of Connecticut | [e-mail] | US Eastern |
| Carolyn Caron | Univ. of Saskatchewan | [e-mail] | Regina, Canada |
| Sean Buehler | Univ. of Connecticut | | US Eastern |

## Schedule

> Team leaders should reach out prior to Jan 11-15th to schedule team meetings when members can meet to discuss project objectives and divide work.

| Date | Time | Where |
| -----|------|-------|
| Jan 11 | 11:00 am PST | GatherTown Tripal Galaxy Room |
| Jan 13 | 1pm EST/10am PST | Gaterthtown Tripal Galaxy Room

## Background

- TreeGenes/Hardwoods sharing the same Galaxy instance.

### Workflows
Available Workflows near ready
- RNA-seq workflow for hardwoods
- WGCNA is also available

Challenges
- Conda dependencies can cause problems for.
- Result files that live on the Galaxy server.

### Module
Issues to address
- file extensions: https://github.com/tripal/tripal_galaxy/issues/162
- large files.

## Plans
Action items
1. File Management
- Autmatically load files in the global Galaxy library that are listed as site-wide on the Tripal site -- Stephen
- Create a tool in Galaxy that will provide genomes for selection and share out all appropriate files for that genome for downstream tools in the workflow --
2. Authentication
- Explore options for how to have unified logins with Drupal and Galaxy.
3. UI Bugs/Requests
- Delete doesn't work on Workflow Submission page
- Menu system - provide way to find jobs
- [Output Datasets within Datasets (review)](https://github.com/tripal/tripal_galaxy/commit/4b727470ef8e6a7d7c2b14481bee344da9d46248)

## Resources
[TreeGenes Galaxy Server](https://treegenes.cam.uchc.edu)
[Hardwood Tripal Galaxy notes](https://docs.google.com/document/d/1s7ZwPRzN9o7Olxxni-JSz_dshhCp5T8jN21ktmrMNu4/edit?ts=5e4bfed8)
[Galaxy Local Files](https://galaxyproject.org/admin/tools/data-managers/)

## Accomplishments
> Once the Codefest week is over, here is where the team documents the accomplishments that were made during the week!