<span style="font-size:0.8em;">18th-20th March 2024</span>
[Project Board](https://github.com/orgs/nf-core/projects/65/views/1)
The Group Discussion Channel
`#hackathon-mar-2024-pipelines`
---
# Team Purpose
- Improve existing pipelines
- Add new functionality
- Write tests
- Perform reviews
- Grab an issue and work on it
---
# I am new, where to start?
* "_I don't know anything about GitHub!_" Click [here](https://github.com/skills/introduction-to-github) for a nice hands-on tutorial 😉.
* How to use the GitHub Project board [here](https://www.youtube.com/watch?v=gwaHz7-9v1Y&list=PL3xpfTVZLcNhfyF_QJIfSslnxRCU817yc&index=1)
* Hands-on tutorial on Markdown on GitHub [here](https://github.com/skills/communicate-using-markdown).
* Learn how to review pull requests [here](https://github.com/skills/review-pull-requests).
---
# Tasks
<small>
* **Beginner**:
- If you are interested in a specific pipeline contact its maintainer
- Look for issues with "first-timer-only" tag on the project board
* **Advanced**:
- Suggest how an existing pipeline can be improved with new functionality
- Write completely new subworkflows for existing pipelines
- Any issues that do not have the "first-timer-only" tag
- Review PRs
</small>
---
# Team Leads
Always ask first in: `#hackathon-march-2024-pipelines`
If there are issues that can't be resolved, for pointers or suggestions, contact:
* [Friederike Hanssen](https://github.com/FriederikeHanssen)
* [Jose Espinosa-Carrasco](https://github.com/JoseEspinosa)
* [Maxime Garcia](https://github.com/maxulysse)
* [Laurence Kuhlburger](https://github.com/LaurenceKuhl)
* [Simon Heumos](https://github.com/subwaystation)
---
# Remember
* Add yourself to Team Members with your GitHub username (next slide)
* Assign yourself to issues on the [project board](https://github.com/orgs/nf-core/projects/65/views/1)
* Post your daily progress in the next slides!
---
# Team Members
[@FriederikeHanssen](https://github.com/FriederikeHanssen) [@JoseEspinosa](https://github.com/JoseEspinosa) [@maxulysse](https://github.com/maxulysse) [@LaurenceKuhl](https://github.com/LaurenceKuhl) [@subwaystation](https://github.com/subwaystation) [@jasmezz](https://github.com/jasmezz) [@jenmuell](https://github.com/jenmuell) [@bentsherman](https://github.com/bentsherman) [@fmalmeida](https://github.com/fmalmeida) [@daisymut](https://github.com/daisymut)
---
# Day 1
- Ben: started fetchngs -> rnaseq meta-pipeline (to prototype importing entire pipelines as modules)
---
# Day 2
- Fal: - Finalized code, adding a module for calling empty drops in scrnaseq pipeline ([#81](https://github.com/nf-core/scrnaseq/issues/81))
---
# Day 3
- Ben: initial draft: https://github.com/bentsherman/fetchngs2rnaseq
<style>
.reveal section img { background:none; border:none; box-shadow:none; }
body {
background-image: url(https://raw.githubusercontent.com/nf-core/logos/master/nf-core-logos/nf-core-logo-square.svg);
background-size: 7.5%;
background-repeat: no-repeat;
background-position: 3% 96%;
background-color: #181a1b;
}
.reveal body {
font-family: 'Roboto', sans-serif;
font-weight: 300;
color: white;
}
.reveal p {
font-family: 'Roboto', sans-serif;
font-weight: 300;
color: white;
}
.reveal h1 {
font-family: 'Roboto', sans-serif;
font-style: bold;
font-weight: 400;
color: white;
font-size: 62px;
}
.reveal h2 {
font-family: 'Roboto', sans-serif;
font-weight: 300;
color: white;
}
.reveal h3 {
font-family: 'Roboto', sans-serif;
font-style: italic;
font-weight: 300;
color: white;
}
.reveal p {
font-family: 'Roboto', sans-serif;
font-weight: 300;
color: white;
}
.reveal li {
font-family: 'Roboto', sans-serif;
font-weight: 300;
color: white;
}
.reveal pre {
background-color: #272822 !important;
display: inline-block;
border-radius: 7px;
color: #aaaba9;
}
.reveal pre code {
color: #eeeeee;
background-color: #272822;
font-size: 100%;
}
.reveal code {
background-color: #272822;
font-size: 75%;
}
.reveal .progress {
color: #24B064;
}
.reveal .controls button {
color: #24B064;
}
.reveal blockquote {
display: block;
position: relative;
width: 90%;
margin: 20px auto;
padding: 5px;
background: rgba(255, 255, 255, 0.05);
box-shadow: 0px 0px 2px rgb(0 0 0 / 20%);
}
</style>
{"title":"nf-core/hackathon","description":"<a href=\"https://www.nf-co.re\"><img src=\"https://raw.githubusercontent.com/nf-core/logos/master/byte-size-logos/bytesize-darkbg.svg\" width=\"65%\"><img></a>","contributors":"[{\"id\":\"0a8b4266-478b-4cfe-a38d-6ad40d3436ec\",\"add\":94,\"del\":0}]"}