---
# System prepended metadata

title: 'GGG 298 Lab 5 '

---

# Lab 5, GGG298
## Setup environment and files
ssh in:
```ssh datalab-23@farm.hpc.ucdavis.edu```

```
module load mamba
mamba create --name smash -y sourmash
mamba activate smash
sourmash
```
Make directory that you will be using.
```
mkdir ~/sourmashdir
```

Go to his directory: 
```
cd ~ctbrown/data/sulfo
```

Copy to mine:
```cp a.fa.gz b.fa.gz c.fa.gz ~/sourmashdir/```


## Run Sourmash
Run Titus's command:
```
sourmash sketch dna a.fa.gz --name 'Sulfurihydrogenibium' -o a.sig.zip
sourmash sketch dna b.fa.gz --name 'Sulfitobacter sp. EE-36' -o b.sig.zip
sourmash sketch dna c.fa.gz --name 'Sulfitobacter sp. NAS-14.1' -o c.sig.zip

sourmash compare *.sig.zip -o sulfo.cmp

sourmash plot sulfo.cmp
```

To look at image, open it through RStudio by clicking on the file.


