# Lab 5, GGG298 ## Setup environment and files ssh in: ```ssh datalab-23@farm.hpc.ucdavis.edu``` ``` module load mamba mamba create --name smash -y sourmash mamba activate smash sourmash ``` Make directory that you will be using. ``` mkdir ~/sourmashdir ``` Go to his directory: ``` cd ~ctbrown/data/sulfo ``` Copy to mine: ```cp a.fa.gz b.fa.gz c.fa.gz ~/sourmashdir/``` ## Run Sourmash Run Titus's command: ``` sourmash sketch dna a.fa.gz --name 'Sulfurihydrogenibium' -o a.sig.zip sourmash sketch dna b.fa.gz --name 'Sulfitobacter sp. EE-36' -o b.sig.zip sourmash sketch dna c.fa.gz --name 'Sulfitobacter sp. NAS-14.1' -o c.sig.zip sourmash compare *.sig.zip -o sulfo.cmp sourmash plot sulfo.cmp ``` To look at image, open it through RStudio by clicking on the file.