Excercise - HackMD

# Excercise ``` atlas init -w ProjectFolder -d shared/databases shared/Human cd ProjectFolder ``` Modify the config.yaml file as follows: ``` tmpdir: /tmp/ ``` ## Group 1 Groundwater ``` ######################## # Execution parameters ######################## threads: 12 mem: 120 large_mem: 250 large_threads: 8 assembly_threads: 8 assembly_memory: 350 ``` ## Group Peat Initialize a atlas project with the samples in peat. ``` ######################## ## Execution parameters ######################### threads: 8 mem: 220 large_mem: 120 large_threads: 8 assembly_threads: 16 assembly_memory: 500 ``` # Group Human ``` ######################## # Execution parameters ######################## threads: 8 mem: 90 large_mem: 250 large_threads: 8 assembly_threads: 8 assembly_memory: 350 ``` # run atlas First with dryrun then without ``` cd ~/ProjectFolder atlas run binning --profile cluster --keep-going -j 10 ```