---
# System prepended metadata

title: snakemake
tags: [Yan's materail]

---


https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html

snakemake with R
https://lachlandeer.github.io/snakemake-econ-r-tutorial/initial-steps-with-snakemake.html#first-steps-in-the-mrw-pipeline

course material
https://coderefinery.github.io/snakemake_hackathon/Snakemake_intro/

Questions 
https://siili.rahtiapp.fi/snakemake_hack

snakemake bianca 
https://hackmd.io/@UPPMAX/snakemake-hackathon


https://hackmd.io/@pmitev/Python_Bianca


https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html