Common options to redirect cache to your project folder

# Change to fit your account
PRJ_DIR=/crex/uppmax2022-0-00

# general
export XDG_CACHE_HOME=${PRJ_DIR}/nobackup/XDG_CACHE_HOME
mkdir -p $XDG_CACHE_HOME

# Singularity
export SINGULARITY_CACHEDIR=${PRJ_DIR}/nobackup/SINGULARITY_CACHEDIR
export SINGULARITY_TMPDIR=${PRJ_DIR}/nobackup/SINGULARITY_TMPDIR
mkdir -p $SINGULARITY_CACHEDIR $SINGULARITY_TMPDIR
# Apptainer
export APPTAINER_CACHEDIR=${PRJ_DIR}/nobackup/SINGULARITY_CACHEDIR
export APPTAINER_TMPDIR=${PRJ_DIR}/nobackup/SINGULARITY_TMPDIR
mkdir -p $APPTAINER_CACHEDIR $APPTAINER_TMPDIR
# Disabling cache completelly - perfect when you only need to pull containers
# export SINGULARITY_DISABLE_CACHE=true
# export APPTAINER_DISABLE_CACHE=true


# Conda
export CONDA_ENVS_PATH=${PRJ_DIR}/nobackup/CONDA_ENVS
mkdir -p $CONDA_ENVS_PATH
export CONDA_PKGS_DIRS=${PRJ_DIR}/nobackup/CONDA_PKGS
mkdir -p $CONDA_PKGS_DIRS

# Nextflow / nf-core
export NXF_HOME=${PRJ_DIR}/nobackup/NXF_HOME
export NXF_SINGULARITY_CACHEDIR=${PRJ_DIR}/nobackup/NXF_SINGULARITY_CACHEDIR
mkdir -p $NXF_HOME $NXF_SINGULARITY_CACHEDIR

# dbdeployer
export SANDBOX_HOME=${PRJ_DIR}/nobackup/SANDBOX_HOME
export SANDBOX_BINARY=${PRJ_DIR}/nobackup/SANDBOX_BINARY
mkdir -p $SANDBOX_HOME $SANDBOX_BINARY

Contacts:

• Pavlin Mitev
• UPPMAX
• SNIC AE@UPPMAX - related documentation

tags: UPPMAX, SNIC