pangeo

@pangeo

Pangeo Community

Public team

Joined on Aug 31, 2022

  • Introduction The BioHackathon Europe took place in Barcelona in November 2023, where a group of people interested in image data analysis gathered around the project "Enhancing the image analysis community in Galaxy". Although the Galaxy platform [@Galaxy] has a strong presence in omics fields like genomics and proteomics, it has yet to fully establish itself in the imaging community. At the moment, efforts to integrate tools and create workflows for image analysis in Galaxy are scattered across research fields and locations. The vision of this project is not only to join those efforts but also to go beyond by creating cross-discipline image analysis resources. By fostering collaboration among scientists and enthusiasts from different fields we aim to create a dynamic community around image data management and analysis. The initiative started in summer 2023 when the group gathered around a newly-created Expert Group on FAIR Image Data Workflows within Euro-BioImaging, the European Research Infrastructure offering open access to imaging technologies, training, and data services. Additionally, it aims to tap into the capabilities of Simula Research Laboratory, a Norwegian non-profit research organization that addresses crucial scientific and engineering problems with a societal impact, focusing on five primary ICT research areas: Communication Systems, Cryptography, Scientific Computing, Software Engineering, and Machine Learning. Together, these entities will foster the development of a community dedicated to crafting FAIR computational workflows specifically tailored for image analysis. Project goals
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  • Do not separate climate versus EO More about about grids and it is more about GIS versus global model grids Data cubes: base structure of xarray one assumption is the co-gridding. Alignment of samples. co-sampled.
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  • WIFI SSID: BIDS23sideevents PW: @bids2023 Shared document https://hackmd.io/@pangeo/pangeo-BiDS23/edit Thank you for joining the Introduction to Pangeo at BiDS'23! We're delighted to have you here 🎉
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  • https://hackmd.io/@pangeo/clivar-2022 Thank you for joining the CLIVAR CMIP6 Bootcamp! We're delighted to have you here 🎉 What? Pangeo is a community-centric initiative that promotes open, reproducible, and scalable geoscience. All questions, comments and recommendations are welcome!
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  • October 6, 2022: DGGS and their potential impact in Geoscience and Geospatial communities Thank you for joining the Pangeo online Show & Tell 🎬 💬 ! We're delighted to have you here 🎉 What? Pangeo is a community-centric initiative that promotes open, reproducible, and scalable geoscience. Show and Tell are online calls to gather feedback informally, but more importantly, it's a monthly celebration of what the Pangeo community has accomplished. S&T are organised by members of Pangeo Europe continental meetings (see notes of previous meetings here).
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  • Data requirements Group-1: Ruth Mottram Copernicus Arctic Reanalysis Has data been downloaded from https://climate.copernicus.eu/copernicus-arctic-regional-reanalysis-service or elsewhere? CDS is under maintainance and it may be difficult to download these datasets. CMIP6 What variables do you need to generate ice sheet SMB using offline models to statistically scale CMIP6 output? (with Christian Rodehacke)? CMIP6 historical runs [last 20 years would be sufficient]: sub-daily (6/3-hourly) surface radiation and turbulent fluxes, surface and 2m temperatures, 10 m wind speed, cloud liquid and ice water paths, cloud cover,
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