---
tags: Tuesday
---

# 2022-02-01

Attending: Will, Petr, JM, June, Seb, David, Kevin, Jason, Frances, Khaled, David Stirling, Chris, Andreas, Wilma, Melissa, Muhanad, Erin, Mina, Josh,

Start: 2:00 pm UK

## Accepting minutes from [last meeting](https://github.com/ome/meeting-minutes)

## Project Status

(2-3 minutes each)

- IDR:
- next release: 2 new studies
- idr0127 (timelapse bacteria), idr0123 (FISH-omics)
- Khaled: search - deployed for testing

- NGFF
- OME-NGFF 0.4
- Good community calls last week
- Final spec updates (transformations, clarifications)
- JSON schemas / samples
- reading/writing implementations (Python, Java)
- Hackathon (Zulip, image.sc gather.town)
- squid-py compatibility

- Releases
- Jenkins update See [summary](https://github.com/ome/devspace/issues/188)
- Upgrade prior to moving to python 3.8, CentOS7

- Glencoe
- Updating Gradle, Java LTS versions 17 etc

- Community
- Global bioimaging workshop last week
- wide range of participants - global
- enthusistic chat
- OMERO and IDR workshops - went well
- Next week: Karolinska Institute
- OME meeting

## AOB

(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)

## Main Topic

(20-25 minutes plus 15 minutes questions max)
Glencoe software:
- deploy with microservices
- Use shared storage for Zarr data in well-defined format (Fileset IDs etc.)
- Data duplicated
- Different pyramid structure from raw data
- Make OMERO.server aware of shared storage
- run bioformats2raw
- import OME.xml - get Image ID
- tell microservice Image ID and path/to/zarr

- Previous investigation from Simon https://gitlab.com/openmicroscopy/incubator/bioformats-urlreader