25th March 2025.
Attending: Will
- Will: Working to revive previous iviewer PR to use Vectortile for loading Shapes for tiles https://github.com/ome/omero-iviewer/pull/227.
- Done: Created lots of polygons on big image (250635 Polgons!)
- Done: fixed merge conflicts with branch (6 years old)
- Now: script to create OMERO.table
- Then: update views.py code to use OMERO.table to load shapes per region
11th March 2025.
Attending: Will, Andreas, J-M, Petr
- Will iviewer PR https://github.com/ome/omero-iviewer/pull/465 JM: need to look at the bigger picture. How to handle location-based loading of ROIs?
- Will: Use cases doc created at https://docs.google.com/document/d/16vo0J_T6uy7zWPsu0lQz1VaSRqLjtH5CDGoasCjxMrk/edit?tab=t.0
- Will: Options are PostGIS (not likely) and OMERO.tables (see https://github.com/ome/omero-figure/issues/569)
- Will: Previous iviewer PR to use Vectortile for loading Shapes for tiles https://github.com/ome/omero-iviewer/pull/227. Could try to use OMERO.table at the backend for location based queries? JM: OK.
- 12:12 End
25th Feb: 11:00.
Attending: Will, Andreas, JM, Petr,
- I created an issue for lots of Channels: https://github.com/ome/omero-figure/issues/624
- We have https://github.com/ome/omero-figure/issues/569 for the adding ROIs issue. Still needs more thought
- Iviewer "Save as figure" PR is https://github.com/ome/omero-iviewer/pull/465. What other viewers are we thinking of?
- The figure file format is described at https://github.com/ome/omero-figure/blob/master/docs/figure_file_format.rst which specifies the required and optional fields etc. We could formalise that a bit more, with MUST, MAY etc as at https://ngff.openmicroscopy.org/0.4/index.html but I am not sure that it will be worth creating JSON schema files for validation etc.
- Big Zarr https://github.com/ome/omero-figure/issues/625
- TODOs:
- describe workflows for working with big images & ROIs
- What can I load when? Backend support?
- Spec for grouping channels
- OME-Zarr labels support in figure?
- Do we think about implementing ROI Folders support in web?
- First support adding many Shapes to ROI in iviewer!
- Where to describe workflows? Internal gdoc. Can share on gh when 'ready' EDIT: [created gdoc](https://docs.google.com/document/d/16vo0J_T6uy7zWPsu0lQz1VaSRqLjtH5CDGoasCjxMrk/edit?tab=t.0)
- Meeting again same time next week EDIT: (2 weeks).