Standup 2021-02-02

--- tags: standup, temp --- # Standup 2021-02-02 ## image.sc <li>[???] <a href="https://forum.image.sc/t/48244/4">[sc:bf,matlab] How to in-memorily read multi-file images? (EbolaChan)</a> &nbsp</li> <li>[???] <a href="https://forum.image.sc/t/48323/1">[sc:imagej,fiji,bf,java] Java code to convert 8 bit images to 16 bit image (pmadhanbabu)</a> &nbsp</li> <li>[Josh] <a href="https://forum.image.sc/t/47046/14">[sc:web] Sharing contents (vsnlme108)</a> Solved? Hi @joshmoore Thanks for reply. see the screenshot before and after duplication…&nbsp</li> <li>[???] <a href="https://forum.image.sc/t/48320/1">[sc:omero] Packaging screen data for transfer between different OMERO-instances? (rohola)</a> &nbsp</li> <li>[???] <a href="https://forum.image.sc/t/48138/13">[sc:imagej,fiji,bf,omero,imagej-fiji] Looking for ways to group and merge the channels from the list of files (group files with similar names) (pmadhanbabu)</a> Solved? May be I can use this to update the pixel type… .setPixelsType(PixelType.UINT8,…&nbsp</li> <li>[???] <a href="https://forum.image.sc/t/45630/4">[sc:cellprofiler,qupath,bf] Remove label and macro from a WSI (Ajay_Zalavadia)</a> &nbsp</li> <li>[???] <a href="https://forum.image.sc/t/47977/7">[sc:bf,python-bioformats] Problems installing python-bioformats (java not found) (u2056710)</a> &nbsp</li> <li>[FYI] <a href="https://forum.image.sc/t/47324/3">[sc:imagej,macro,segmentation,bf,batch-processing,scripting,imglib2,neubias] NEUBIAS Academy @Home: webinar series about “Image Big Data”, starting on January 14th 2021 (RoccoDAntuono)</a> &nbsp</li> <li>[???] <a href="https://forum.image.sc/t/48125/5">[sc:omero,fiji] Omero Tips January edition : Fiji Omero plugin (1/3) - Installation (NicoKiaru)</a> &nbsp</li> Petr <li>[???] <a href="https://forum.image.sc/t/48244/4">[sc:bf,matlab] How to in-memorily read multi-file images? (EbolaChan)</a> &nbsp</li> <li>[???] <a href="https://forum.image.sc/t/48323/1">[sc:imagej,fiji,bf,java] Java code to convert 8 bit images to 16 bit image (pmadhanbabu)</a> &nbsp</li> <li>[???] <a href="https://forum.image.sc/t/47046/14">[sc:web] Sharing contents (vsnlme108)</a> Solved? Hi @joshmoore Thanks for reply. see the screenshot before and after duplication…&nbsp</li> <li>[???] <a href="https://forum.image.sc/t/48320/1">[sc:omero] Packaging screen data for transfer between different OMERO-instances? (rohola)</a> &nbsp</li> <li>[???] <a href="https://forum.image.sc/t/48138/13">[sc:imagej,fiji,bf,omero,imagej-fiji] Looking for ways to group and merge the channels from the list of files (group files with similar names) (pmadhanbabu)</a> Solved? May be I can use this to update the pixel type… .setPixelsType(PixelType.UINT8,…&nbsp</li> <li>[???] <a href="https://forum.image.sc/t/45630/4">[sc:cellprofiler,qupath,bf] Remove label and macro from a WSI (Ajay_Zalavadia)</a> &nbsp</li> <li>[???] <a href="https://forum.image.sc/t/47977/7">[sc:bf,python-bioformats] Problems installing python-bioformats (java not found) (u2056710)</a> &nbsp</li> <li>[???] <a href="https://forum.image.sc/t/47324/3">[sc:imagej,macro,segmentation,bf,batch-processing,scripting,imglib2,neubias] NEUBIAS Academy @Home: webinar series about “Image Big Data”, starting on January 14th 2021 (RoccoDAntuono)</a> &nbsp</li> ## QA * None (no output) * http://www.openmicroscopy.org/qa2 ## Jobs <li>[???] <a href="https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-test-repo/672/">[merge-ci] BIOFORMATS-test-repo</a> <ul><li><code>[Pipeline] }</code></pre> <li><code>Failed in branch handling /uod/idr/repos/curated/samples</code></pre> <li><code>Starting building: BIOFORMATS-test-folder #107107</code></pre> <li><code>[Pipeline] }</code></pre> <li><code>Starting building: BIOFORMATS-test-folder #107108</code></pre></ul></li> Petr <li>[???] <a href="https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-test-repo/672/">[merge-ci] BIOFORMATS-test-repo</a> <ul><li><code>[Pipeline] }</code></pre> <li><code>Failed in branch handling /uod/idr/repos/curated/samples</code></pre> <li><code>Starting building: BIOFORMATS-test-folder #107107</code></pre> <li><code>[Pipeline] }</code></pre> <li><code>Starting building: BIOFORMATS-test-folder #107108</code></pre></ul></li> ## Emails * [Josh] [idr-submission: advice - Mike Ando](https://groups.google.com/u/2/a/openmicroscopy.org/g/idr/c/IX3yn4QwxOE) * [Josh] [idr-submission - local omero leiden db](https://groups.google.com/u/2/a/openmicroscopy.org/g/idr/c/iYz3V96Dz0U)