---
tags: Tuesday
---

# 2024-08-06

Attending: Will, Dom, Frances, Khaled, Chris, Jason, Kyle, Melissa, David, Andreas, Erin, Kevin, David S,

Start: 2:00 pm UK

## Accepting minutes from [last meeting](https://hackmd.io/team/ome?nav=overview)

## Project Status

(2-3 minutes each)

- IDR (Frances)
- ongoing work on ngff-challenge
- idr00157 plant study. v2 conversion needed first. Initial upload to s3 embassy bucket
- idr0090 already in v2. Dom testing conversion to v3
- idr0044 - sharding example
- Dom, using a [nextflow workflow](https://github.com/dominikl/nf_ngff_conv) on pilot-zarr3-dev. Was looking into [BatchConvert](https://github.com/Euro-BioImaging/BatchConvert) which is nextflow based as well, but in my option too complex for the task.
- Will: idr0044 images very big - can't load all at once
- idr0138 unlikely to be included in next release
- David looking at microservices. svs fix for idr0043. bioformats2raw dependency resolved. To be included in release next week

- OMERO (Chris)
- omero-py PRs open for review
- server build including old jars due to ivy upgrade from 2.4 to 2.6. Seems to include some test dependencies https://forum.image.sc/t/critical-old-and-unsafe-log4j-jar-file-in-omero-5-6-12/100016/3
- plan to release 5.6.13 next week when JM/Seb back
- Not a security issue as jars aren't used

- Bio-Formats (Melissa)
- 7.3.1 release notes updated
- Some PRs open

- NGFF
- ngff challenge slides at https://drive.google.com/file/d/1rGh5zkA7jD42ehNTbJh4BXN1G8nRpOVB/view

- GerBI

- Glencoe
- few people off over next week(s)

- Community (Jason)
- BINA Community Meeting OME meeting end of May at MBL
- OME Resources, e.g. who runs artifactory?
- Chris - hard decsions on what we can support

## AOB

(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)

## Main Topic

(20-25 minutes plus 15 minutes questions max)