---
# System prepended metadata

title: '2022-04-05'
tags: [Tuesday]

---

---
tags: Tuesday
---

# 2022-04-05

Attending: Will, Petr, Frances, Seb, Dom, Susanne K, Jean-Marie, Josh, Wilma, June, David, Kyle, Melissa, Chris, Khaled, Jason, Emil, David S, Mina, Erin, Andreas, 

Start: 2:00 pm UK

## Accepting minutes from [last meeting](https://github.com/ome/meeting-minutes)

## Project Status

(2-3 minutes each)

- IDR:
    - Datasets: next release will contain 3 studies (3 viruses) from 1 publication. End of this month
    - "Exploring IDR" videos from Petr, now on IDR front page

- Bio-Formats:
    - ZarrReader ongoing, last few issues

- NGFF
  - Units - diversion between OME-NGFF spec and OME.xml
  - Metadata testing
      - pick a set of Datasets
      - find storage
      - convert to Zarr using known version of bioformats2raw, compare etc
      - test in Fiji, cli tools for BF - show-inf etc.
      - start with OME-TIFFs from download pages
  - GBI workshop tomorrow. For beginners, Fiji-based
    - Call for public data (other that IDR and EMBL)
    - Testing on-going
    - Napari and Data issues so far.
    - URLs for re-use on webpage?
  - [Get Your Brain Straight](https://insightsoftwareconsortium.github.io/GetYourBrainStraight/HCK01_2022_Virtual/) this week
    - on image.sc island and imagesc.zulipchat.com
  - DANDI pre-chats ongoing - hackathon 21st April

- OMERO
  - Looking at GitHub action to improve release workflow, on-going discussion
  - Moving to manual steps for upcoming release (mid-April)
- Glencoe
    - See units above
    - omero-web PR for showing versions
    - omero-metadata PR - merged
    - Kevin's NGFF OMERO work: Chris creating new repos. PixelBuffer to lookup OME-NGFF from OMERO. Updating jars in OMERO. jzarr SDK v1 end-of-life.
        - extensions to import infrastructure

- Community
  - Preparing/Reviewing material for upcoming I2K workshop and EMBL/EBI course
      - I2K workshop video due 27th April 

## AOB

(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
- OME Office Space

## Main Topic

(20-25 minutes plus 15 minutes questions max)

Susanne: I3D:bio

- OMERO-focussed
- OMERO.mde
- Electronic Lab Notebook - connection to OMERO
- 3 positions, 3 years. 1 developer
- 10 - 15 production OMERO servers currently
