---
tags: NGFF
---

# NGFF-EMBL-HD-2020-10-16

## I2K Workshop

- intro
- vision: sharing big data to interactively work with collaborators
- short technology
- accessing data
- fiji / napari / pure java script
- mobie should disappear and just be imagej/bdv
- opening cloud datasets
- **interaction with label mask images**
- bookmarks logic...
- in imagej, then even open multiple images...
- download
- read this remotely blah
- download takes longer than session
- let's a smaller example
- publishing data (?)
- another story
- have some data that you find interesting
- you want to share it with
- too small then its dropbox...
- Steps
- missing n5-aws-zarr
- missing BDV Spim object...
- de.embl.cba.mobie.N5ImageLoader
- implement ViewerImgLoader and MultiResolutionImgLoader
- https://github.com/BIOP/bigdataviewer-bioformats
- cf. https://github.com/zarr-developers/zarr-python/issues/540
- several registered datasets? (multimodal)
- Platy paper EM, voxel space overlayed
- Need voxel side (part of BDV affine transform)
- sending S3 link ...
- ilastik?
- storing tables?
- https://github.com/saalfeldlab/n5/pull/73#issuecomment-694566238
- summary
- 2 hours to focus on the reading
- teaser workshop
- just watching
- demonstrate writing?