# Hackathon July 2020 --- <!-- Put the link to this slide here so people can follow --> slide: https://hackmd.io/@nf-core-hackathon-july-2020/By4n2-bkD --- # DSL2 & modules  --- ## Primary focus Working on DSL2 modules or porting pipelines to Nextflow DSL2 --- ## Group members - Harshil Patel - Gregor Sturm - Jose Espinosa - Maxime Garcia - Gisela Gabernet - Friederike Hanssen --- ## Standardizing module structure ### Aim Agree on a structure for modules ### Progress Finding more issues while implementing modules. Current list of module requirements being added to modules README via [PR #39](https://github.com/nf-core/modules/pull/39) --- ## FastQC module ### Aim Clean up FastQC module (for chipseq and other pipelines) ### Progress Discovering more stuff to be standardized across modules --- ## Sarek ### Aim Port pipeline to DSL2 ### Progress * Done: * build_indices subworkflow * preprocessing * mapping * Current process: MarkDuplicates --- ## Sarek ### Next * Use nf-core/modules * Convert remaining processes --- ## nf-core/chipseq/ ### Aim Port the pipeline to DSL2 ### Progress * WIP: Implement all the required software to DSL2, listed in [issue 167](https://github.com/nf-core/chipseq/issues/167) * WIP: Porting the main pipeline code to DSL2, under the development branch --- ## Thank you! :sheep: