HackMD
Intrahost variation in MPXV
The following image summarizes SNPs (no indels) found in four samples from BioProject PRJNA845087.
The image is interactive. Clicking on bars of the histogram of change counts (yellow bars) will restrict the image to that subset of changes.
The image has the following panels:
Top panel
Distribution of detected changes across MPXV genomes (accession MP903343). The Y axis is the alternative allele frequence. Each change is depicted using two marks:
- circle = corresponds to median AF across samples. Size of circle corresponds to the number of samples conatining this change
- vertical rule = vertical rule shows the spread of AFs of inidividual samples (from min to max)
Lower panel left
Histogram of substitution types. Clicking on any bar will restrict the entire graph to these changes.
Lower panel middle
Histogram of 5'-context
Lower panel right
Histogram of 3'-context
