BMMB554
===
- [Syllabus](/8qakr3HbSe-avT1IIZD86Q) - About this course
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- [Lecture 1](/kwGlqDuxTkWt26k_gbZwkg) - Introduction and History
- [Lecture 2](/Uv8ViAU_Qz-sQfnMAzzdlw) - Shell I
- [Lecture 3](/Z0IASJrEQMmx1TVWJQQpWg) - Shell II
- [Lecture 4](/RoCggQXDQym63EWWfBTFdg) - Intermission + History of Sequencing
- [Lecture 5](/yCKJF06ZTLu0cC5DXOqN7Q) - Python 1 - Variables, expressions, statements, functions
- [Lecture 6](/wUAhPm_bS6C1jI_eam90bg) - Python 2 - Strings and lists and FASTQ
- [Lecture 7](/0HnCf1n4SdijjIFNMoyI9g) - Python 3 - A more careful look at lists and dictionaries
- [Lecture 8](/yObWgcHBTXCuJDebqdarjg) - Python 4 - Recap of what we learned so far
- [Lecture 9](/KqlQyQolTEuMLwoqcf3dAg) - Python 5 - Processing files
- [Lecture 10](/BAAoS2DiRIaBPOJIzb_NDw) - Pandas 1 - Basic functionality
- [Lecture 11](/Y3R5DN4kSqulYXfX2Jcd1g) - Pandas 2 - Aggregation, sorting, merging]
- [Lecture 12](/V5HgMJnfTCuHbasCEDaSRw) - Python 6 - Making graphics programmatically
- [Lecture 13](/qeVCFCE9Sbi4HqNOZ5d0XQ) - Git/GitHub 1 - Git logic
- [Lecture 14](/AMlx1SzOSVm0rmcxIdxXyg) - GitHub/Git 2 - GitHub magic
- Lecture 15 - Guest Lecture by Kaivan Kamali - Introduction to AI
- [Lecture 16](/aGnxAmAcTxeqE7QOVH8Z1w) - Illumina sequencing
- [Lecture 17](/OXAX8FKAQ8y9PEGTwKmiGw) - Oxford Nanopore
- Lecture 18 - Class assessment for group projects
- [Lecture 19](/wKpZx2RrTVSLFhYpBIln8w) - Pacific Biosciences (PacBio)
- [Lecture 20](/W7MyVty1Rje0SiVdG1IOpw) - Introduction to Galaxy
- [Lecture 21](/z8lvMoTKRQ265YeSLGneqw) - Assembly I --- *k*-mers and graphs
- [Lecture 22](/uJ1F1uClQv64_KdgWTSMVw) - Assembly II --- Assembly from long reads
- [Lecture 23](/qmOIFJ24Q0mH11JbdlkPBg) - Assembly, Projects and what's next
- [Lecture 24](/GJpVkrjCQFap9nq2uQRTlg) - Sequence alignment
- [Lecture 25](/XFwf1Ds4Qemot_2ZrFYJbw) - Finding matches quickly
- [Lecture 26](/sRZaFyAsQq-HbeHl5u0YLg) - Variant calling in microbes + Key features of Galaxy collections
- [Lecture 27](/6YF5HNrPT6G6KMgG0QPptA) - What is transcriptomics?
- [Lecture 28](https://hackmd.io/D3XZAorPR8OIE0agK1PAvw)
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- [Projects](https://hackmd.io/pWlFb2KKQyGeEiuM5VHT6w) - description of class projects
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