# RNA-seq and ChIP-seq Course
February 4th-6th 2020
Alessandra Vigilante and Rocio T Martinez-Nunez
King's College London

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## Day 1: Introduction and RNA-seq analysis

**Morning**

- Introduction to RNA-seq : experimental details.
What makes a good design for RNA-seq analysis?
- Introduction to Command Line
Basic commands you will need
- Introduction to RNA-seq:
What are the main parameters that we are measuring? How? What are the potential biases?

**Afternoon**

- Practical on quality control
- Alignment
- Counting features

## Day 2: RNA-seq (cont.) and Introduction to ChIP-seq

**Morning**

- Differential expression analysis (theory and practical)

**Afternoon**

- Introduction to the theory behind ChIP-seq seq

## Day 3: ChIP-seq