# Adoncholaimus thalassophygas mitochondrion

- Table of Content
[ToC]

# 1-) MBG run
With parameters MBG -k 1001 -w 250 -a 5 -u 150
With all reads: ``` /lustre/scratch123/tol/teams/blaxter/users/ek5/SW9/E5/E5_hifireads.fasta.gz ```


>72<11>13>15>68<71>69<12>13>15>68<71>69<12>13>15>68<71>69<12>13>15>68<71>69<12>13>15>68<71>69<12>13>15>68<71>69<12<16   177

## 1.1-) MBG run

With parameters MBG -k 1401 -w 250 -a 5 -u 150


# 2 -

When I look at the mapping of reads back to the assembled mito from assembly, it doesnt seem to me to be correct.



But maybe the mito is 16kb as seem from the third mapping plot above.

# 3 . Mapping



Took all the reads mapped above and ran a MBG


Then the image bellow is a nucmer plot of erna's 26Kb sequence, with the sequence 1 from the MBG graph above.


Annotating the 1.fa contig with Mitos.