---
# System prepended metadata

title: Camilla

---

# Camilla
- Auto-generated Table of Content
[ToC]

## 1 pti_organel
### 1.1 pti_organel MBG= 6001K

```/software/team311/mu2/mbg-noKbug/MBG/bin/MBG -k 6001 -w 250 -a 5 -u 150 -i pti_organel_genomes.HiFiMapped.fa.gz -o pti_organel_genomes.HiFiMapped.6k.gfa -t 18 ```


![](https://i.imgur.com/vbpiMFH.png)


## 2 strob_organel
### 2.1 strob_organel MBG= 1001K

``` /software/team311/mu2/mbg-noKbug/MBG/bin/MBG -k 1001 -w 250 -a 5 -u 150 -i strob_organel_genomes.HiFiMapped.fa.gz -o strob_organel_genomes.HiFiMapped.1k.gfa -t 18 ```

### 2.2 strob_organel MBG= 6001K

```echo '/software/team311/mu2/mbg-noKbug/MBG/bin/MBG -k 6001 -w 250 -a 5 -u 150 -i strob_organel_genomes.HiFiMapped.fa.gz -o strob_organel_genomes.HiFiMapped.6k.gfa -t 18 ```

![](https://i.imgur.com/79UQgjU.png)


### 2.2.1 strob_organel MBG= 6001K chloroplast 1

![](https://i.imgur.com/uuL2E5L.png)


```
# Related mitogenome is 159983 bp long and has 135 genes

contig_id       frameshifts_found       genbank_file    length(bp)      number_of_genes
final_mitogenome        rps16   final_mitogenome.gb     159207             110

```